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Article #830Genotypic notation of colour and pattern phenotypes in domesticated Fancy rats
From: Ananke
Date: Sat, 29 Dec 2001 06:27
Date: Sat, 29 Dec 2001 06:27
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8796 bytes
Recent new information regarding the difference between the colour we call "Mink" in Australian domestic rats and the Mink in Europe and the US has prompted quite a bit of reading and research regarding both the liklihood of new mutations of colour and the protocols for naming new colour and pattern genotypes. The point of all this reading is to try and understand genetic notation in other animals, so that new colours (like the Australian mink turning out to be different from European mink) can be identified and denoted in a manner which is logical, consistent with notation of colour and pattern already existing in rats and consistent with research and information on notation of genotypes in other animals. For instance: Roan. Anyone who's ever had anything to do with horses will immediately recognise the name roan as being significant of coloured hair in a coat interspersed with white hair. Likewise Greying, in dogs, cats and horses this is either in localised areas or over larger areas of the animal, and becomes gradually more grey throughout the animal's lifetime. Although Greying in dogs is slightly different to greying in horses, the name and effect of the mutation causing this colouring is quite similar and reference to it will be understood by dog, cat and horse owners. People who come to own horses after owning dogs will be familiar with Greying when they hear the term used. Naming colour influencing genes is generally done by giving the genotype a letter indicating the colour or effect of the gene, so we have black denoted as B, D for dilution of colour, A for agouti and so forth. The naming is important since we have the Australian mink to name, since it has been apparently identified as being different to the minks found in Europe and the US. (Sue I'm waiting for info on the test breeding so I can include reference in our standards :-) ) Since Australian mink is apparently quite a bit more blue or grey than European mink, I would like to suggest (m^b (^b indicates the b to be superscript)) as the notation for Australian mink. There are two reasons for this. As stated, the Australian mink is apparently more blue than European or US mink, hence the use of (^b) as "blue" mink. It is much more likely that a colour effecting mutation would occur on a locus already known to affect colour by more than one mutation, rather than on a completely different locus. It is logical then that the three different minks, European, US and now Australian, are all different mutations on the M, mink, locus rather than the Australian mink occurring on a completely new locus. Thus the proposal of (m^b) for notation of the Australian mink. Then there's blue. The effect of the dilution gene has only recently been discovered in Australian rats, but the phenotype is consistent with that found in dd rats overseas, and dd in other animals. Whether or not the blue rats in Australia turn out to be identical with those in Europe or the US, it is much more likely that a new mutation causing a blue colour would occur on a locus known for at least two previous colour effecting mutations (dd and d^rd^r (blue and "russian" blue)) than on an entirely different locus previously unknown for colour effecting mutation. In the absence of molecular analysis or test breeding with blue rats from other countries, it would seem logical, for the time being, to denote the blue rats in Australia as aadd, a standard notation for a blue coat in just about every mammal bred for colour. Back to grey. In recent years in the US, a lighter blue mutation has occured. Some breeders have denoted this as aagg. I have been unable to find anything to indicate that the light blue is anything other than a different blue. It certainly doesn't sound like the effect of the G gene as described in any other mammal. Hence, it would seem more logical, in the absence of molecular analysis or test breeding which would show this light blue to be a mutation on a completely different locus, to consider this light grey-blue to be another mutation on a locus already known for at least two different colour affecting mutations. The husky rat. If husky in rats begins with dark colouring in some parts of the coat, and silvering gradually spreads through the coloured areas to produce the faded coat colouring in the standard areas described by the 'pattern', on initial reading of husky standards and their comparison to the effects of the G locus mutations in cats, horses and dogs, one starts to wonder if perhaps the G locus should not have been reserved for the same reference in rats as in all the other mammals, just as W and E are widely understood in other mammals, hence no denotation of W or E have yet been made in fancy rats. The idea of light blue rats being aagg has been fairly widely accepted in the US, but again, there doesn't seem to be any reason for it being denoted as a separate locus, apart from the concept that someone thought it looked like a light blue-grey. If a husky rat has a phenotype which is produced only by white marking, then given the highly unstable nature of the H locus which produces most of the other patterns in rats, we could look more closely at a cause there. While there is nothing to say that the husky phenotype might not be cuased by the effects of several genes, including a mutation on the H locus, patterns on a rat are easily predicted by skin colouring from virtually the time of birth, and the pigment remains in the skin throughout the animals' lives. The development of more and more greying or roaning in the patterned areas of the husky rat indicate that the H locus on its own is not the most likely cause. In light of this, I would like to propose that the light blue colour be considered for notation as (d^ld^l). In summary: Study of the genetics of colour and pattern in domesticated Fancy rats in Australia is still fairly young. Many of the markings and colours are quite easily identifiable, for example the agouti and hooded phenotypes, hence we can confidently assume to use the same notation for the genotypes causing these effects as used overseas: Agouti (A/-) and Hooded (hh). When it comes to new mutations affecting the phenotype of colour and patterns which may be relevant to the colour and pattern standards described here, it would appear sensible at the very least, to further study the effects of different colour and pattern affecting mutations as denoted in other animals, so that we can benefit from the experience and research done on those animals and also name new mutations in a manner which will be more readily understood by both rat owners and researchers of genetics and phenotypes. The jury is still out as to whether the husky rat is a colour or a pattern, and in the absence of any apparently husky rats here to test breed to silvered or marked animals, the proposition of notation for the husky phenotype remains one for discussion. http://bowlingsite.mcf.com/Genetics/Genrefs.html http://www.vgl.ucdavis.edu/~lvmillon/coatclr.html http://www.people.fas.harvard.edu/~brown/dogs/genetics/color-genetics.htm http://www.fanciers.com/other-faqs/color-genetics.html http://www.rodentfancy.com/rmfe/husky.shtml http://www.bubblegunners.org/hawthorn/varieties.html http://www.miceandrats.com/standrat.htm http://members.dingoblue.net.au/~farrall/bruce/index.html Ana Farrall Remember the last time you were sane and well rested, and act like that. farrall at dingoblue dot net dot au http://members.dingoblue.net.au/~farrall
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fd648,c27734f37be0848c,start X-Google-Attributes: gidfd648,public X-Google-Thread: 1062c1,c27734f37be0848c,start X-Google-Attributes: gid1062c1,public X-Google-ArrivalTime: 2001-12-28 22:30:15 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!sn-xit-02!supernews.com!news-x2.support.nl!news-x.support.nl!colt.net!dispose.news.demon.net!demon!203.97.37.7!news.xtra.co.nz!news1.optus.net.au!optus!spool01.syd.optusnet.com.au!spool.optusnet.com.au!210.49.20.118.MISMATCH!not-for-mail From: Ananke <FarrallNO@SPAMdingoblue.net.au> Newsgroups: aus.science,aus.pets Subject: Genotypic notation of colour and pattern phenotypes in domesticated Fancy rats Date: Sat, 29 Dec 2001 17:27:56 +1100 Organization: LETAC Reply-To: FarrallNO@SPAMdingoblue.net.au Message-ID: <9goq2u4rjvrbjbenlf08mst0ghesjlprr2@4ax.com> X-Newsreader: Forte Agent 1.7/32.534 MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Lines: 133 NNTP-Posting-Host: 198.142.38.70 X-Trace: 1009607252 26904 198.142.38.70