Thread View: bionet.biology.computational
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Started by Tijesunimi Odebode
Fri, 10 May 2013 11:57
Genedoc
Author: Tijesunimi Odebode
Date: Fri, 10 May 2013 11:57
Date: Fri, 10 May 2013 11:57
39 lines
7237 bytes
7237 bytes
Good morning, I am a graduate student and a first time user of genedoc. I tried importing a .mfa (multifasta) alignment file using genedoc, but I got an error message saying "duplicate sequence name found." How do I fix this problem? I will really appreciate any help. Thanks in advance. Here is some part of the file: TGGATCTGCGGGAGCGTGAGCGGTTGCGCGGACAGCGCCTGCAGGTCGGCCGTGAAGTCA AGGATGCCTTCTTGTGTTCCGGCGGCCAGGGCATCGGCGATGACCTGAGGCGGCACGTTC GGCCACAGCCCGAACGGCGTTCGCACATCGGCGTAGCTCGTCGAGTAGCCGTAGTTCGGG TCGCCGTAGCCCAGGTTGACGATCACC = score = 59667 type = DM L1 = 4392353 L2 = 4345492 AL1 = 59664 AL2 = 59636 P_ID = 99.89 >379026087 AP012340:177550-178025 (+) TGTGCCGGTGTGAGGTCCGCATACGTGGTGTGCACCGTGAGTATCCCGAATACTGCGTTG ATATCGGACAGGACATTGAGTGGATACCGCGGGAAGTCGGCGAAACCGTCGTACTCGAGG GTGTAGGTCGTCGTCGGATAGGGATTGTCCGGGG---TCGCCCCGTAGAACGGTAGGCCG AGGGTGGTGACATTCAGACCGGGTATGCGCGCAAGTATCCCGCCATTGGGATTCATCTCG TTGCCGATCAAGATGAAATTGAGCTGGCTGGGGCTGGGAGCGTTGGGACCCAGCGAGATG AGGTGCTGCATTTCCAGGGACGCGATGACGGCGCTCTGCGAATAGCCGAACACGGTGACG TGGTTTCCGGCGTTGATTTGCTC--CCA-AATCGCGCCGTCGAGAATCTGTAGGCCCAAC TGCACCGAGGTTTGGAAGGGCAGGGATTTGACGCCGGTGATCGGATATAGCTCTTCGGGC GT >31742509 BX248333:180260-180741 (+) TGCGCGGGCGTGAGGTCCAAATACTTGGTGTGTACGAATGTGATGCCTGCAACCGCGTTG AGGTCGGAAATGAAGTTGAGCGGGTATCGCGAGAAGTCGGCGAACCCGTCGTACTCGAGC GTGTAGATGGCCGTCGGATAGATCGTGTCCGAGGGCGTTGCGCCATAGAACGTCAGGTCC AGAGTCGGAAGCGTCAGATCCGGGAACCGCGCGAGCATACCGCCATTGGGGTTCATTTCA TTGCCGACAAGCACGAAATTGAGGTCGCTCGCCGAAGGTGCGGCCCCGCCCATCGCCGTG AACCTCTGCATCTCCAGCGACGCGATTATGGCGCTTTGCGACCAGCCGAAAACGGTGACC GCGTTTCCGGTGGTCGCGAGCTCTACCATGATCGCGTCGTGCAAGATGGTCAAGCCCTCT TCCACTGACGTGTTGAGGACCAAACTTCTGACACCGGTGAGTGGGTACAACTCTTCGGGT GT = score = 482 type = M2 L1 = 4392353 L2 = 4345492 AL1 = 476 AL2 = 482 P_ID = 69.25 >379026087 AP012340:179382-179864 (+) CTGCGCGGGCGTGAGGTCCAAATACTTGGTGTGTACGAATGTGATGCCTGCAACCGCGTT GAGGTCGGAAATGAAGTTGAGCGGGTATCGCGAGAAGTCGGCGAACCCGTCGTACTCGAG CGTGTAGATGGCCGTCGGATAGATCGTGTCCGAGGGCGTTGCGCCATAGAACGTCAGGTC CAGAGTCGGAAGCGTCAGATCCGGGAACCGCGCGAGCATACCGCCATTGGGGTTCATTTC ATTGCCGACAAGCACGAAATTGAGGTCGCTCGCCGAAGGTGCGGCCCCGCCCATCGCCGT GAACCTCTGCATCTCCAGCGACGCGATTATGGCGCTTTGCGACCAGCCGAAAACGGTGAC CGCGTTTCCGGTGGTCGCGAGCTCTACCATGATCGCGTCGTGCAAGATGGTCAAGCCCTC TTCCACTGACGTGTTGAGGACCAAACTTCTGACACCGGTGAGTGGGTACAACTCTTCGGG TGT >31742509 BX248333:178426-178902 (+) CTGTGCCGGTGTGAGGTCCGCATACGTGGTGTGCACCGTGAGTATCCCGAATACTGCGTT GATATCGGACAGGACATTGAGTGGATACCGCGGGAAGTCGGCGAAACCGTCGTACTCGAG GGTGTAGGTCGTCGTCGGATAGGGATTGTCCGGGG---TCGCCCCGTAGAACGGTAGGCC GAGGGTGGTGACATTCAGACCGGGTATGCGCGCAAGTATCCCGCCATTGGGATTCATCTC GTTGCCGATCAAGATGAAATTGAGCTGGCTGGGGCTGGGAGCGTTGGGACCCAGCGAGAT GAGGTGCTGCATTTCCAGGGACGCGATGACGGCGCTCTGCGAATAGCCGAACACGGTGAC Tijesunimi Odebode
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