1000 Genomes' VCF: where is reference genome?

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Article #2169

#2169

From: Serikzhan S. Kazi
Date: Sun, 11 Sep 2011 10:09

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Hi all,

VCF 4.0 lists SNPs in "Chr. number Position Ref ALT", e.g. it can be "1
42342 A C" meaning
in Chr.1 at position 42342 "A" has changed to "C". Now the question is,
what is the reference
genome for VCF? I.e. where do I find the sequence that VCF uses as a
reference?

Thanks in advance.

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Date: Sun, 11 Sep 2011 13:09:48 +0300
From: "Serikzhan S. Kazi" <kazi.serikzhan@gmail.com>
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subject: 1000 Genomes' VCF: where is reference genome?
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