RAPD Clades and Types

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#391

From: Ana Laura
Date: Wed, 11 May 2011 19:37

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Hi there,

I'm starting in RAPD analysis and I've found that it doesn't seem to be any
agreement about the best way to measure divesity with this marker. Even
worst, if you have decided to use a clustering method or a similarity
coefficient, there is still the clade question. When a clade can be called a
type? I think it's important since you need to stablish the numbers of types
in order to calculate any diversity index. To me, it's cryptic how authors
have calculated their values.

Any opinion, correction, comment?

Thanks.

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Hi there,<br><br>I&#39;m starting in RAPD analysis and I&#39;ve found that =
it doesn&#39;t seem to be any agreement about the best way to measure dives=
ity with this marker. Even worst, if you have decided to use a clustering m=
ethod or a similarity coefficient, there is still the clade question. When =
a clade can be called a type? I think it&#39;s important since you need to =
stablish the numbers of types in order to calculate any diversity index. To=
 me, it&#39;s cryptic how authors have calculated their values.<br>
<br>Any opinion, correction, comment?<br><br>Thanks.<br>

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Date: Wed, 11 May 2011 14:37:52 -0500
From: Ana Laura <alquimista.lauren.k@gmail.com>
To: mol-evol@magpie.bio.indiana.edu
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