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Hi, Pro. Barker=20
=C2=A0=C2=A0=C2=A0 I also met this issue in mine research. The different nu=
cleotide substitution rate=C2=A0between=C2=A0D-loop and Cytb gene=C2=A0may =
result in the inconsistent topology.=20
=C2=A0
=C2=A0
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=C2=A0=C2=A0=C2=A01. phylogeny from mtDNA sequences (Stuart Barker (Prof))


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Message: 1
Date: Mon, 31 Oct 2011 21:29:00 +1100
From: "Stuart Barker (Prof)" <sbarker@une.edu.au>
Subject: [Molecular-evolution] phylogeny from mtDNA sequences
To: mol-evol@magpie.bio.indiana.edu
Message-ID: <a3njj0$m50lhv@outbound-mail04.westnet.com.au>
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I would appreciate any information on this question -

Is anyone aware of cases where D-loop and Cytb sequences obtained=20
from the SAME animals give inconsistent phylogenies?

Stuart Barker

J.S.F. (Stuart) Barker HonDSc FTSE
Emeritus Professor
School of Environmental and Rural Science
University of New England
Armidale, NSW 2351
Australia

Honorary Professor
Faculty of Veterinary Science
University of Sydney
Sydney, NSW

HOME: 5/19-23 Oaklands St
Mittagong
NSW 2575

Ph.=C2=A0 HOME ++ 61 2 4872 2490
email - sbarker@une.edu.au




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<table cellspacing=3D"0" cellpadding=3D"0" border=3D"0" ><tr><td valign=3D"=
top" style=3D"font: inherit;"><DIV>Hi, Pro. Barker </DIV>
<DIV>&nbsp;&nbsp;&nbsp; I also met this issue in mine research. The differe=
nt nucleotide substitution rate&nbsp;between&nbsp;D-loop and Cytb gene&nbsp=
;may result in the inconsistent topology. </DIV>
<DIV>&nbsp;</DIV>
<DIV>&nbsp;</DIV>
<DIV>--- <B>11=E5=B9=B411=E6=9C=881=E6=97=A5=EF=BC=8C=E5=91=A8=E4=BA=8C, mo=
l-evol-request@oat.bio.indiana.edu <I>&lt;mol-evol-request@oat.bio.indiana.=
edu&gt;</I></B> =E5=86=99=E9=81=93=EF=BC=9A<BR></DIV>
<BLOCKQUOTE style=3D"PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: rgb(=
16,16,255) 2px solid"><BR>=E5=8F=91=E4=BB=B6=E4=BA=BA: mol-evol-request@oat=
.bio.indiana.edu &lt;mol-evol-request@oat.bio.indiana.edu&gt;<BR>=E4=B8=BB=
=E9=A2=98: Mol-evol Digest, Vol 65, Issue 1<BR>=E6=94=B6=E4=BB=B6=E4=BA=BA:=
 mol-evol@magpie.bio.indiana.edu<BR>=E6=97=A5=E6=9C=9F: 2011=E5=B9=B411=E6=
=9C=881=E6=97=A5,=E5=91=A8=E4=BA=8C,=E4=B8=8A=E5=8D=881:03<BR><BR>
<DIV class=3DplainMail>Send Mol-evol mailing list submissions to<BR>&nbsp;&=
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et</A><BR><BR>To subscribe or unsubscribe via the World Wide Web, visit<BR>=
&nbsp;&nbsp;&nbsp; <A href=3D"http://www.bio.net/biomail/listinfo/mol-evol"=
 target=3D_blank>http://www.bio.net/biomail/listinfo/mol-evol</A><BR>or, vi=
a email, send a message with subject or body 'help' to<BR>&nbsp;&nbsp;&nbsp=
; <A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to=3Dmol-evol-reques=
t@net.bio.net" ymailto=3D"mailto:mol-evol-request@net.bio.net">mol-evol-req=
uest@net.bio.net</A><BR><BR>You can reach the person managing the list at<B=
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o=3Dmol-evol-owner@net.bio.net" ymailto=3D"mailto:mol-evol-owner@net.bio.ne=
t">mol-evol-owner@net.bio.net</A><BR><BR>When replying, please edit your Su=
bject line so it
 is more specific<BR>than "Re: Contents of Mol-evol digest..."<BR><BR><BR>T=
oday's Topics:<BR><BR>&nbsp;&nbsp;&nbsp;1. phylogeny from mtDNA sequences (=
Stuart Barker (Prof))<BR><BR><BR>------------------------------------------=
----------------------------<BR><BR>Message: 1<BR>Date: Mon, 31 Oct 2011 21=
:29:00 +1100<BR>From: "Stuart Barker (Prof)" &lt;<A href=3D"http://cn.mc921=
.mail.yahoo.com/mc/compose?to=3Dsbarker@une.edu.au" ymailto=3D"mailto:sbark=
er@une.edu.au">sbarker@une.edu.au</A>&gt;<BR>Subject: [Molecular-evolution]=
 phylogeny from mtDNA sequences<BR>To: <A href=3D"http://cn.mc921.mail.yaho=
o.com/mc/compose?to=3Dmol-evol@magpie.bio.indiana.edu" ymailto=3D"mailto:mo=
l-evol@magpie.bio.indiana.edu">mol-evol@magpie.bio.indiana.edu</A><BR>Messa=
ge-ID: &lt;a3njj0$<A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to=
=3Dm50lhv@outbound-mail04.westnet.com.au" ymailto=3D"mailto:m50lhv@outbound=
-mail04.westnet.com.au">m50lhv@outbound-mail04.westnet.com.au</A>&gt;<BR>Co=
ntent-Type:
 text/plain; charset=3D"us-ascii"; format=3Dflowed<BR><BR><BR>I would appre=
ciate any information on this question -<BR><BR>Is anyone aware of cases wh=
ere D-loop and Cytb sequences obtained <BR>from the SAME animals give incon=
sistent phylogenies?<BR><BR>Stuart Barker<BR><BR>J.S.F. (Stuart) Barker Hon=
DSc FTSE<BR>Emeritus Professor<BR>School of Environmental and Rural Science=
<BR>University of New England<BR>Armidale, NSW 2351<BR>Australia<BR><BR>Hon=
orary Professor<BR>Faculty of Veterinary Science<BR>University of Sydney<BR=
>Sydney, NSW<BR><BR>HOME: 5/19-23 Oaklands St<BR>Mittagong<BR>NSW 2575<BR><=
BR>Ph.&nbsp; HOME ++ 61 2 4872 2490<BR>email - <A href=3D"http://cn.mc921.m=
ail.yahoo.com/mc/compose?to=3Dsbarker@une.edu.au" ymailto=3D"mailto:sbarker=
@une.edu.au">sbarker@une.edu.au</A><BR><BR><BR><BR><BR>--------------------=
----------<BR><BR>_______________________________________________<BR>Mol-ev=
ol mailing list<BR><A
 href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to=3DMol-evol@net.bio.ne=
t" ymailto=3D"mailto:Mol-evol@net.bio.net">Mol-evol@net.bio.net</A><BR><A h=
ref=3D"http://www.bio.net/biomail/listinfo/mol-evol" target=3D_blank>http:/=
/www.bio.net/biomail/listinfo/mol-evol</A><BR><BR>End of Mol-evol Digest, V=
ol 65, Issue 1<BR>***************************************<BR></DIV></BLOCKQ=
UOTE></td></tr></table>
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