🚀 go-pugleaf

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I wish to introduce the TOPD/FMTS software to evaluate similarities and =
differences between phylogenetic trees=2E TOPD/FMTS can compare trees wi=
th leaf-sets that either completely or partially overlap and can be also=
 used to compare two trees=2C one or both of which are multigene family =
trees=2E
The version 1=2E0 of TOPD/FMTS implements the following methods to compa=
re phylogenetic trees=3A
            - Split distance=2E
            - Nodal distance=2E
            - Disagree=2E
            - Taxa in common=2E
            - Quartets=2E
- Triplets=2E
 =

Each option is also complemented with a randomisation analysis to test t=
he null hypothesis that the similarity between two trees is not better t=
han chance expectation=2E
 =

TOPD/FMTS is freely available at=3A http=3A//genomes=2Eurv=2Ecat/topd =2E=

For more details see the article Puigbo et al=2E 2007=2E Bioinformatics =
doi=3A 10=2E1093/bioinformatics/btm135 =2E

------------------------------------------------------------------------=
--------------------------------------------
Pere Puigb=F2 Avalos=2C PhD Student
Evolutionary Genomics Group=2C
Biochemistry and Biotechnology Department=2C
Rovira i Virgily University=2E
C/Marcel=B7l=ED domingo s/n=2E 43007=2E Campus Sescelades=2E Tarragona=2E=


Phone=3A 0034=2E977=2E55=2E84=2E86
Web Page=3A http=3A//genomes=2Eurv=2Ecat
E-mail=3A ppuigbo=40urv=2Ecat
------------------------------------------------------------------------=
--------------------------------------------

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B=22=3EI wish to introduce the TOPD/FMTS software to evaluate similariti=
es and differences between phylogenetic trees=2E TOPD/FMTS can compare t=
rees with leaf-sets that either completely or partially overlap and can =
be also used to compare two trees=2C one or both of which are multigene =
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family=3A SimSun=3B mso-ansi-language=3A EN-GB=22=3EEach option is also =
complemented with a randomisation analysis to test the null hypothesis t=
hat the similarity between two trees is not better than chance expectati=
on=2E=3Co=3Ap=3E=3C/o=3Ap=3E=3C/SPAN=3E=3C/P=3E
=3CP class=3DMsoNormal style=3D=22MARGIN=3A 0cm 0cm 0pt=22=3E=3CSPAN lan=
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reast-font-family=3A SimSun=3B mso-ansi-language=3A EN-GB=22=3E=3C/SPAN=3E=
=26nbsp=3B=3C/P=3E
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g=3DEN-GB style=3D=22FONT-SIZE=3A 11pt=3B FONT-FAMILY=3A Arial=3B mso-fa=
reast-font-family=3A SimSun=3B mso-ansi-language=3A EN-GB=22=3ETOPD/FMTS=
 is freely available at=3A =3CA href=3D=22http=3A//genomes=2Eurv=2Ecat/t=
opd=22 target=3D1=3E=3CFONT color=3D=233a2eb5=3Ehttp=3A//genomes=2Eurv=2E=
cat/topd=3C/FONT=3E=3C/A=3E =2E=3Co=3Ap=3E=3C/o=3Ap=3E=3C/SPAN=3E=3C/P=3E=
=3CPRE=3E=3CSPAN lang=3DEN-GB style=3D=22FONT-SIZE=3A 11pt=3B FONT-FAMIL=
Y=3A Arial=3B mso-fareast-font-family=3A SimSun=3B mso-ansi-language=3A =
EN-GB=22=3EFor more details see the article =3CA href=3D=22http=3A//bioi=
nformatics=2Eoxfordjournals=2Eorg/cgi/content/abstract/btm135v1=3Fpapeto=
c=22 target=3D1=3E=3CFONT color=3D=23800080=3EPuigbo et al=2E 2007=2E Bi=
oinformatics doi=3A 10=2E1093/bioinformatics/btm135=3C/FONT=3E=3C/A=3E =2E=
=3C/SPAN=3E=3C/PRE=3E=3CPRE=3E=3CSPAN lang=3DEN-GB style=3D=22FONT-SIZE=3A=
 11pt=3B FONT-FAMILY=3A Arial=3B mso-fareast-font-family=3A SimSun=3B ms=
o-ansi-language=3A EN-GB=22=3E=3C/SPAN=3E=26nbsp=3B=3C/PRE=3E=3CBR=3E=3C=
BR=3E-------------------------------------------------------------------=
-------------------------------------------------
=3Cbr=3EPere Puigb=F2 Avalos=2C PhD Student
=3Cbr=3EEvolutionary Genomics Group=2C
=3Cbr=3EBiochemistry and Biotechnology Department=2C
=3Cbr=3ERovira i Virgily University=2E
=3Cbr=3EC/Marcel=B7l=ED domingo s/n=2E 43007=2E Campus Sescelades=2E Tar=
ragona=2E
=3Cbr=3E
=3Cbr=3EPhone=3A 0034=2E977=2E55=2E84=2E86
=3Cbr=3EWeb Page=3A http=3A//genomes=2Eurv=2Ecat
=3Cbr=3EE-mail=3A ppuigbo=40urv=2Ecat
=3Cbr=3E----------------------------------------------------------------=
----------------------------------------------------=3C/BR=3E=3C/BR=3E

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