🚀 go-pugleaf

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Last year, we published(*) a new software to compare phylogenetic trees that
may be useful for your project. The program is called TOPD/FMTS and it's
freely available at http://genomes.urv.cat/topd <http://genomes.urv.es/topd>
.


(*) Puigbo P, Garcia-Vallve S, McInerney JO. Bioinformatics, 2007.
23:1556-1558.



2008/11/18 <areitzel@whoi.edu>

> I am interested in comparing phylogenetic distances between two trees.  The
> two
> trees are likelihood trees for different proteins, but each tree has the
> same
> taxa to facilitate pairwise comparisons.  I was hoping someone could give
> me
> some advice on how to compare these two distance matrices.  The trees do
> not
> have the same topology so the order of the taxa varies between the distance
> matrices for the two proteins.  The goal for this project is to test for
> co-evolution of the two proteins via regression.  Thanks in advance for any
> assistance.
>
>
>
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Last year, we published(*) a new software to compare phylogenetic trees that may be useful for your project. The program is called TOPD/FMTS and it&#39;s freely available at <a href="http://genomes.urv.es/topd">http://genomes.urv.cat/topd</a>.<br>
<br><br>(*) Puigbo P, Garcia-Vallve S, McInerney JO. Bioinformatics, 2007. 23:1556-1558.<br><br><br><br><div class="gmail_quote">2008/11/18  <span dir="ltr">&lt;<a href="mailto:areitzel@whoi.edu">areitzel@whoi.edu</a>&gt;</span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">I am interested in comparing phylogenetic distances between two trees. &nbsp;The two<br>
trees are likelihood trees for different proteins, but each tree has the same<br>
taxa to facilitate pairwise comparisons. &nbsp;I was hoping someone could give me<br>
some advice on how to compare these two distance matrices. &nbsp;The trees do not<br>
have the same topology so the order of the taxa varies between the distance<br>
matrices for the two proteins. &nbsp;The goal for this project is to test for<br>
co-evolution of the two proteins via regression. &nbsp;Thanks in advance for any<br>
assistance.<br>
<br>
<br>
<br>
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</blockquote></div><br>

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