🚀 go-pugleaf

List readers!

Prompted by Betty Mansfield, please allow me to post a selection of URLs
pointing at projects and resources mentioned at the TIGR Microbial Genomes
III meeting. The list is not exhaustive and for more information look out
for my review of the meeting which will be appearing in Molecular
Microbiology in a few issues time, or take a look at Microbial and
Comparative Genomics Vol 3, no. 4, which contains abstracts of the meeting.


Cheers

Mark
********************************************************
Dr Mark Pallen, Senior Lecturer in Medical Microbiology,
St Bartholomew's and the Royal London School
of Medicine and Dentistry, London, EC1A 7BE
email:m.pallen@qmw.ac.uk  WWW: http://www.medmicro.mds.qmw.ac.uk/~mpallen
phone: day ++44(0)1716018414, eves ++44(0)1438869477, FAX ++44(0)1716018409
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A Selection of the Genome Projects
discussed at Microbial Genomes III
Chantilly, Virginia   January 29-February 1, 1999
Organized by www.tigr.org


For reasons of space, only a selection of microbial genomes is listed.
Fuller lists of microbial genome projects, both in progress and completed,
can be found on

http://www-fp.mcs.anl.gov/~gaasterland/genomes.html
(at the time of writing listing 65 procarytotic genome projects) and

http://www.tigr.org/tdb/mdb/mdb.html.

Background information on organisms being sequenced can be found on

http://www.er.doe.gov/production/ober/EPR/mig_top.html
and
http://www.ncgr.org/microbe/


Saccharomyces cerevisiae

http://genome-www.stanford.edu/Saccharomyces/

http://speedy.mips.biochem.mpg.de/mips/yeast/yeast_genome.htmlx

Escherichia coli K12

http://www.genetics.wisc.edu:80/index.html

http://arep.med.harvard.edu/

Bacillus subtilis

http://www.pasteur.fr/Bio/SubtiList.html



Comparative genomics


Helicobacter pylori 26695

http://www.tigr.org/tdb/mdb/hpdb/hp_bg.html

Helicobacter pylori  J99

http://www.astra-boston.com/hpylori/


Mycobacterium tuberculosis H37Rv

http://www.sanger.ac.uk/Projects/M_tuberculosis/

Mycobacterium tuberculosis CDC1551

http://www.tigr.org/tdb/mdb/mdb.html


Pyrocococcus furiosus

http://www.genome.utah.edu/sequence.html

http://comb5-156.umbi.umd.edu/bags.html

Pyrococcus horikoshii 

http://www.bio.nite.go.jp/E-home/ot3db-e.html

Pyrococcus abyssi

http://www.genoscope.cns.fr/externe/English/Projet/Projet_B/B.shtml



Selected microbial genomes in progress at the Sanger Centre
Candida albicans, Campylobacter jejuni, Neisseria meningitidis serogroup A,
Streptomyces coelicolor, Dictyostelium discoideum, Leishmania major,
Plasmodium falciparum, Trypanosoma brucei

http://www.sanger.ac.uk/Projects/Microbes/

http://www.sanger.ac.uk/Projects/Protozoa/

http://www.sanger.ac.uk/Projects/C_albicans/

Selected microbial genomes in progress at TIGR
Shewenella putrefaciens,  Deinococcus radiodurans,  Staphylococcus aureus,
Vibrio cholerae,  Streptococcus pneumoniae  Type 4, Thermotoga  maritima,
Plasmodium  falciparum

http://www.tigr.org/tdb/mdb/mdb.html

http://www.tigr.org/cgi-bin/BlastSearch/blast.cgi?





Table 2

Databases and other on-line resources

discussed at Microbial Genomes III

Readers interested in microbial genomics might also be interested in
joining the Microbial Genomes mailing list:
http://www.medmicro.mds.qmw.ac.uk/microbial-genomes/


Yeast Proteome Database

http://www.proteome.com/YPDhome.html

EUROSCARF

http://www.rz.uni-frankfurt.de/FB/fb16/mikro/euroscarf

MICADO

http://locus.jouy.inra.fr/micado

STD Sequence Databases

http://www.stdgen.lanl.gov/

Stanford center for TB research: Free Software

http://molepi.stanford.edu/free_software.html

The EpiMatrix Website (epitope prediction)

http://www.hunger.brown.edu/Research/TB-HIV_Lab/EpiMatrix/epimatrix.html

Church Lab WWW site

http://arep.med.harvard.edu/

Sulfonics "Master Catalog"

http://www.sulfonics.com/technologies-bioinformatics.htm

Genome Annotation Consortium

http://grail.lsd.ornl.gov/gac/

Intrez and related projects

http://mork.mshri.on.ca/index.html

Genome Browsers for Bacterial Pathogens

http://www.medmicro.mds.qmw.ac.uk/genomes

Microbial Genomes at NCBI

http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html

http://www.ncbi.nlm.nih.gov/BLAST/unfinishedgenome.html


Mark
********************************************************
Dr Mark Pallen, Senior Lecturer in Medical Microbiology,
St Bartholomew's and the Royal London School
of Medicine and Dentistry, London, EC1A 7BE
email:m.pallen@qmw.ac.uk  WWW: http://www.medmicro.mds.qmw.ac.uk/~mpallen
phone: day ++44(0)1716018414, eves ++44(0)1438869477, FAX ++44(0)1716018409
********************************************************
"Give me an ounce of fact and I will produce you a ton of theory
by tea this afternoon"               Ray Bradbury
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