PGEToolbox: a Matlab toolbox for Population Genetics & Evolution

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1 total messages Started by jamescai Thu, 21 Jun 2007 23:57

#322

Author: jamescai
Date: Thu, 21 Jun 2007 23:57

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Dear All,

PGEToolbox is a Matlab-based program for analysis of polymorphism and
divergence data in population genetics and evolution. It computes
basic statistics of DNA sequence variation and carries out neutrality
tests, such as Tajima's D test, Fu & Li's tests and Fay & Wu's H test.
The significance of tests is determined from the distribution of the
statistics obtained by coalescent simulation. The toolbox performs
McDonald-Kreitman test (and several extensions), and also contains
functions for handling SNP genotype and haplotype data. The latest
version of the program can be obtained from:

http://bioinformatics.org/pgetoolbox/

All the best,

James

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