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Article #14

Re: Dealing with double objects in

#14
From: Ed Griffiths
Date: Wed, 29 Sep 2004 08:02
34 lines
2878 bytes
Tony,


> After cleaning up our ChickAce by renaming some objects into others, I
> ended up with double objects which have exactly the same name, but the
> content is slightly different.
>
> I think I used the -R command in my acefiles and renamed an object into
> another existing object.
>
> The objects should then be merged to my knowledge, but they didn't.
>
> You can find an example at
> https://acedb.asg.wur.nl/chickdb/searches/basic , and type SCW0078
> <https://acedb.asg.wur.nl/chickdb/searches/basic%20and%20type%20SCW0078>
> to find 2 objects with the same name.

I see your problem. One thing that occurs to me is that while these objects
appear to be the same they may actually have different case in their names. Can
you check this by dumping the two SCW0078 objects to an ace file and checking
the exact case of the object names.

First check this out and then we can tackle what to do about it.


cheers Ed
-- 
 ------------------------------------------------------------------------
| Ed Griffiths, Acedb development, Informatics Group,                    |
|        Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,  |
|               Hinxton, Cambridge CB10 1SA, UK                          |
|                                                                        |
| email: edgrif@sanger.ac.uk  Tel: +44-1223-494780  Fax: +44-1223-494919 |
 ------------------------------------------------------------------------
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From: Ed Griffiths <edgrif@sanger.ac.uk>
Newsgroups: bionet.software.acedb
Subject: Re: Dealing with double objects in
Date: 29 Sep 2004 09:02:17 +0100
Organization: BIOSCI/MRC Rosalind Franklin Centre for Genomics Research
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