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Article #156Re: Dumping acedb as XML
From: Ed Griffiths
Date: Wed, 03 Sep 2003 09:12
Date: Wed, 03 Sep 2003 09:12
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Charles, > I am not very ace-savy, but would like to dump and AceDB (ChlamyDB) as > XML. > > This is a first step in an attempt to migrate the data into the GMOD > database schema 'chado'. I would need to know what you mean by "XML" format, perhaps we should discuss this outside of the newsgroup. Send me an email direct about the sort of thing you want to do. I added some code about 2 years ago to acedb to dump acedb data in an xml format but it would need testing etc. (perhaps using you as the guinea pig ?). cheers Ed -- ------------------------------------------------------------------------ | Ed Griffiths, Acedb development, Informatics Group, | | Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, | | Hinxton, Cambridge CB10 1SA, UK | | | | email: edgrif@sanger.ac.uk Tel: +44-1223-494780 Fax: +44-1223-494919 | ------------------------------------------------------------------------
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: f6d40,29094828b2b240a9 X-Google-Attributes: gidf6d40,public X-Google-ArrivalTime: 2003-09-03 02:12:56 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!newsfeed.stanford.edu!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: Ed Griffiths <edgrif@sanger.ac.uk> Newsgroups: bionet.software.acedb Subject: Re: Dumping acedb as XML Date: 3 Sep 2003 10:12:54 +0100 Organization: Sanger Institute Lines: 25 Sender: mod-ace@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <3F55B090.CD0FD098@sanger.ac.uk> References: <3F33CB03.6060603@duke.edu> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 1062580375 3473 193.62.192.80 (3 Sep 2003 09:12:55 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Wed, 3 Sep 2003 09:12:55 +0000 (UTC) X-Original-To: bionet-software-acedb@net.bio.net X-Accept-Language: en X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUAP1WwlqCIqsWvyF5FAQE58gP/e0+v20xZxYeHyO0pOKZM915Yji8x3Hiv ZQotSJoxTTWO3QIN0Ch+eMzI8bROzlTJmV77Ee4ephPhMdAlSCKQeX8b++CO+sPn iww8VJUS/bRD0z/o81pgiznpQygMYaaVWtlvJ1tXbwL+bmE96hlrXuYE0EKWslaz az1R0HiwLFs= =4n6q