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Article #163Re: querying on square-brackets, []
From: Jean Thierry-Mieg
Date: Wed, 14 Aug 2002 15:04
Date: Wed, 14 Aug 2002 15:04
52 lines
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2709 bytes
I guess that what is happening is the following
query:: enters full query syntax
[] initiate arithmetic mode and force the opening of the objects
please try the following 2 tests, i expect both of them to
complete immediatly
test 1:
find sequence [AL505438.1]
this should be fast because find not preceded by query
does the same as the acedb graphic main window top yellow box
that is a strict name search without interpretation
test 2:
query find sequence IS "[AL505438.1]"
this is the fully pedantic form of the query
the presence of IS forces evaluation of name matching
if you are running some kind of web service with a midleware cgi
you should always form the query like in test 2, and inside the string
protect the eventual " \ or // with a \
====
please let me know ASAP of the test result
jean
>this query takes 10 minutes to execute in GrainGenes,
>
> query find sequence [AL505438.1]
>
>Whereas the following queries all complete in less than a second except
>as noted.
>
> query find sequence (AL505438.1)
> query find sequence {AL505438.1}
> query find sequence "[AL505438.1]"
> query find probe [AL505438.1] 7 seconds
> find sequence [AL505438.1]
>
>- Dave
>
>---
>
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: f6d40,3f8543bfeb0403ea X-Google-Attributes: gidf6d40,public X-Google-ArrivalTime: 2002-08-14 08:04:55 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!newsfeed.stanford.edu!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: Jean Thierry-Mieg <mieg@ncbi.nlm.nih.gov> Newsgroups: bionet.software.acedb Subject: Re: querying on square-brackets, [] Date: 14 Aug 2002 16:04:54 +0100 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 53 Sender: mod-ace@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <200208141230.g7ECU1227340@mx.nlm.nih.gov> Reply-To: Jean Thierry-Mieg <mieg@ncbi.nlm.nih.gov> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: TEXT/plain; charset=us-ascii X-Trace: niobium.hgmp.mrc.ac.uk 1029337494 22748 193.62.192.80 (14 Aug 2002 15:04:54 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Wed, 14 Aug 2002 15:04:54 +0000 (UTC) Content-MD5: N/YQTbhhRSjcXkSETq720A== X-Virus-Scanned: by amavisd-milter ( http://amavis.org/ ) X-Razor-id: 1f2fcb547464ed8ed2ee65bdc335e316313ff231 X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUAPVpxkqCIqsWvyF5FAQEjDAP+IDA609dvGjK8mM9LeCH4ScFzrAC7FAPC IU8cZxWr4hC/ohvUd903Wu7kFLHb+X54LIlh8MtxYJM9IMYkRJJWGNIaJItIdYUb qD3k69caKOx+o1Rj2nS0ptuMjKiDgfSIDJTIMmQbBy9SNl4YPeolFn89H3ZvBNAC y7HVB7zK7G4= =FveW