Protein subclass

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#54

From: Nicolas Thierry-Mieg
Date: Thu, 23 Feb 2006 15:31

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hi all,

I am trying to define a subclass named Protein, but this doesn't work 
with any tested xace versions (current supported or daily)
Is this forbidden? If yes, shouldn't xace/tace complain when it reads 
the models?


Here is a small example to illustrate:

######################################
$ more models.wrm
?Ligand Protein
         Sugar

######################################
$ more subclasses.wrm
Class Prot
Visible
Is_a_subclass_of Ligand
Filter Protein

Class Protein
Visible
Is_a_subclass_of Ligand
Filter Protein

Class Sugar
Visible
Is_a_subclass_of Ligand
Filter Sugar

######################################
$ more test.ace
Ligand : "lig1"
Protein

Ligand : "lig2"
Sugar

######################################

Initializing the database works fine
When parsing test.ace, no errors

object lig2 is OK, and shows up in class Sugar
but lig1 is NOT in class Protein (ace says that class Protein is empty), 
although it does show up fine in class Prot.


thanks
nicolas


-- 
------------------------------------------------------------
Nicolas Thierry-Mieg
Laboratoire LSR-IMAG, BP 53, 38041 Grenoble Cedex 9, France
tel : (33/0)4-76-63-55-79, fax : (33/0)4-76-63-55-50
------------------------------------------------------------

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From: Nicolas Thierry-Mieg <Nicolas.Thierry-Mieg@imag.fr>
Newsgroups: bionet.software.acedb
Subject: Protein subclass
Date: Thu, 23 Feb 2006 16:31:45 +0100
Organization: BIOSCI/IUBio, Biology Dept., Indiana University
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