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Article #66Re: Joining objects in tablemaker
From: Keith Bradnam
Date: Tue, 09 Sep 2003 15:20
Date: Tue, 09 Sep 2003 15:20
87 lines
3849 bytes
3849 bytes
Hi Brandon, You can use tablemaker to have columns of data from different classes of object, as long as those classes are connected in your models. I think this is what you wanted. I attach an example tablemaker definition which asks for Locus name (from the ?Locus class) in column 1, then the names of attached ?Allele objects in column 2. The final column is retrieving info from the Allele object. This is where the 'From 2' part is important. Hope this helps, Keith // Spread sheet definition for the ACeDB software // User: wormpub // Date: 2003-09-09_16:18:13 // %n (%%n in the graphic) are parameter to be given on the command line in tace // or by default by the Parameters given in this file // \%n (%n in the graphic) are substituted by the value of column n at run time // Line starting with // are ignored, starting with # are comments Sortcolumn 1 Colonne 1 Subtitle Locus Width 12 Optional Visible Class Class Locus >From 1 Colonne 2 Subtitle Allele Width 12 Mandatory Visible Class Class Allele >From 1 Tag Allele Colonne 3 Subtitle Allele_sequence Width 12 Optional Visible Class Class Sequence >From 2 Tag Sequence // End of these definitions On 5 Sep 2003, Brandon Walts wrote: > Hi- > > I'm wondering if it's possible to join two objects using a common key > tablemaker, similar to joining two tables in a relational database. > > For example, let's say I have a Locus, and that Locus refers to > Positional Candidates, which in turn contain Phenotypes. Is it possible > in tablemaker to display the loci (from the Locus objects) and the > associated Phenotypes (from the Positional Candidate objects) in the > same table by somehow following the reference from a Locus object to the > appropriate Positional Candidate objects? > > I haven't found a way to do this, and the documentation at acedb.org is > spotty on the issue, so I'm guessing that it's impossible, but I wanted > to verify this with the experts here before giving up. > > Thanks in advance > > -Brandon > --- > > ~ Keith Bradnam - WormBase group: http://www.wormbase.org/ ~ ~ The Wellcome Trust Sanger Institute, ~ Hinxton, Cambridge, CB10 1SA, UK. Tel: 01223 494922
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: f6d40,c5b68deac5abed X-Google-Attributes: gidf6d40,public X-Google-ArrivalTime: 2003-09-09 08:20:39 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!sn-xit-02!sn-xit-03!sn-xit-01!sn-xit-08!supernews.com!priapus.visi.com!green.readfreenews.net!news.readfreenews.net!news-out.visi.com!petbe.visi.com!nycmny1-snh1.gtei.net!cambridge1-snf1.gtei.net!news.gtei.net!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: Keith Bradnam <krb@sanger.ac.uk> Newsgroups: bionet.software.acedb Subject: Re: Joining objects in tablemaker Date: 9 Sep 2003 16:20:36 +0100 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 89 Sender: mod-ace@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <Pine.OSF.4.44.0309091615160.1778486-100000@cbi1c.internal.sanger.ac.uk> References: <sf576212.011@mhs.pbrc.edu> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Trace: niobium.hgmp.mrc.ac.uk 1063120836 3125 193.62.192.80 (9 Sep 2003 15:20:36 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Tue, 9 Sep 2003 15:20:36 +0000 (UTC) X-Original-To: bionet-software-acedb@net.bio.net X-X-Sender: krb@cbi1c.internal.sanger.ac.uk X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUAP13vw6CIqsWvyF5FAQEhqAP8DZG194pMZyeBrB3RBz0yv4n23TPGQqwx UfpL+6jKdv8AwdLGpz1WJ2cz3DFLV4qdLmiWjMZ2ZxQa32ICcIaBwiu11weRf0IQ OzF0r9g+/6nbVAr5N49ONEfbP3MWTEZdf3DKcRcNRwr0i+YUiVv1ffUxekT9OGAJ HJQVg6MAm8U= =JizL