Article View: bionet.software.acedb
Article #91Re: Installation is missing acedb, textace, others
From: Rob Clack
Date: Thu, 26 Feb 2004 13:41
Date: Thu, 26 Feb 2004 13:41
61 lines
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3940 bytes
Doug
I hadn't realised the installation instructions were so out of date.
I've never heard of the acedb and textace scripts.
However, here's what I've just done to make a working AceDB.
I downloaded the non-server tarball from the website, and saved the
INSTALL script. Not sure why that opens rather than saves when you
click it, so I'll add that to me to-do list! When I ran the INSTALL
script, it detarred the tarball OK.
Then, from the tools, I ran MakeAceDB to create my database. I edited
MADF because it assumes I'm running ksh, where in fact I run c-shell on
my box here, so I added #!/bin/ksh as the first line.
Then I changed MakeAceDB.com to point to the correct xace binary and the
wspec directory that came in the tarball, after which I could run it
all. Just running ./MADF at the command prompt got it going and my
database was done. There is a MakeAceDB README file which you should have.
The graphical acedb is called xace and the installation script should
leave that in the bin directory. I created a database called newdb, and
to run xace against it, typed
bin/xace newdb
Let me know if you still have problems.
Douglas Hoen wrote:
> Hi,
>
> I am trying to install a brand new AceDB on a Linux system
> (Redhat/Fedora). This is the first time I have tried this. I am
> attempting to follow the instructions in the Installation Guide
> (http://www.acedb.org/Cornell/installation_guide.html) but am having
> problems.
>
> I have downloaded the latest dynamically linked server binary, tools,
> and from http://www.acedb.org/Software/Downloads/monthly.shtml:
>
> ACEDB-serverLINUX.4_9y.tar.gz, ACEDB-demo.4_9y.tar.gz,
> ACEDB-doc.4_9y.tar.gz, ACEDB-help.4_9y.tar.gz, ACEDB-tools.4_9y.tar.gz,
> INSTALL.
>
> I have put all these folders into a new directory owned by a new user
> ("acedb"). I have run the INSTALL script, which appeared to go without
> error, extracting all of the tarballs. However, the files acedb and
> textace which are mentioned in the Guide don't seem to have been
> created, nor does the wspec directory. The following are the only
> directories that were created:
>
> bin, wdemo, wdoc, whelp, wtools.
>
> Please help! Thanks in advance (again),
> Doug
>
>
> ---
>
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: f6d40,f18b0868c16f5f1c X-Google-Attributes: gidf6d40,public X-Google-ArrivalTime: 2004-02-26 05:41:42 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news2.google.com!newsfeed2.dallas1.level3.net!news.level3.com!zeus.visi.com!news-out.visi.com!green.octanews.net!news-out.octanews.net!news.glorb.com!logbridge.uoregon.edu!newsfeed.stanford.edu!bloom-beacon.mit.edu!rfcgr.mrc.ac.uk!hgmp.mrc.ac.uk!net.bio.net From: Rob Clack <rnc@sanger.ac.uk> Newsgroups: bionet.software.acedb Subject: Re: Installation is missing acedb, textace, others Date: 26 Feb 2004 13:41:41 -0000 Organization: Sanger Institute Lines: 62 Sender: mod-ace@rfcgr.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <c1kt2b$516$1@helium.hgmp.mrc.ac.uk> References: <402EA5DA.7020602@mail.mcgill.ca> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii; format=flowed Content-Transfer-Encoding: 7bit X-Trace: helium.hgmp.mrc.ac.uk 1077802901 5162 193.62.192.80 (26 Feb 2004 13:41:41 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Thu, 26 Feb 2004 13:41:41 +0000 (UTC) X-Original-To: bionet-software-acedb@net.bio.net User-Agent: Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.6) Gecko/20040113 X-Accept-Language: en-us, en X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUAQD33lKCIqsWvyF5FAQEVzAQAwnLmR6yvaw2w9oEfblPOMf3Bfa8OtRLA DgCqVojj8gEM8vjhAIGORjP+PaG/6d3rwvP++qjsSLSo9SYSJIsipOhk7+RoyiCh rw4u9Kg5L2Dba82xrC7nESGLOZha1Rv7fD6g1n+DTah+ASqPYy5w/DJ5+/NnSklF FTakHF7TMK4= =jRDM