🚀 go-pugleaf

RetroBBS NetNews Server

Inspired by RockSolid Light RIP Retro Guy

Article View: bionet.software.gcg
Article #3530

Re: BLASTMAL & TOFASTA

#3530
From: Rob Harper
Date: Mon, 08 Nov 1993 11:58
55 lines
2742 bytes
In <1993Nov7.161039.2127@vms.huji.ac.il> inna@vms.huji.ac.il (Inna Shnitman) writes:

>  I'm looking for the source of the old TOFASTA program, written by
>Steve Clark.
>  We use his BLASMAIL command file to send mail to NCBI BLAST server.
>Now I'm transferring GCG from VAX to ALPHA and have to recompile all
>the programs. BLASTMAIL uses Clark's TOFASTA program and I need its
>source. New GCG TOFASTA doesn't give the same output parameters.
>  The old TOFASTA source is no more on the EMBL server where I took
>it from.

I would suggest that instead you use Thon De Boer's excellect script
called mailfasta. It will not only give Blast from NCBI and Fasta from
EMBL but there are interfaces to BLOCKS, GRAIL, PHD, and a host of
other goodies. Here are some ftp sites where you can nab the file from.

Host nic.funet.fi

   In /pub/sci/molbio/unix 
      File mailfasta3.shar 30K (30425 bytes) 05-10-92 

Host isgate.is

   In /pub/Usenet/Usenet.src/comp.archives/auto/bionet.software 
      File mailfasta-3-0 1K (1666 bytes) 09-11-92 

Host pinus.slu.se

   In /pub/molbio/search 
      File mailfasta3.2.readme 10K (10208 bytes) 15-07-93 06:49 
      File mailfasta3.2.shar.gz 11K (11246 bytes) 15-07-93 06:49 

Host ftp.sunet.se

   In /pub/molbio/search 
      File mailfasta3.2.readme 10K (10208 bytes) 15-07-93 08:49 
      File mailfasta3.2.shar.gz 11K (11246 bytes) 15-07-93 08:49 

   In /pub/molbio/unix 
      File mailfasta22.readme 3K (3012 bytes) 28-04-92 
      File mailfasta22.shar.gz 6K (6578 bytes) 27-04-92 
      File mailfasta3.0.gz 8K (8325 bytes) 05-09-92 
      File mailfasta3.0.readme 1K (1321 bytes) 05-09-92 

You will also have to get Don Gilbert's Readseq for mailfasta to work
properly.

RGDS -=ROB=-

--
 Rob Harper                        E-mail:          harper@convex.csc.fi    
 Center for Scientific Computing   Molbio/software: harper@nic.funet.fi
 Tietotie 6, P.O. Box 405          Telephone:       +358 0 457 2076
 SF-02101 Espoo Finland            Fax:             +358 0 457 2302
-- 
Technical Details
Message-ID: <1993Nov8.115856.22527@funet.fi>
Path: arc1-ca.pugleaf.net!gmd.de!xlink.net!howland.reston.ans.net!pipex!uknet!mcsun!news.funet.fi!convex!harper
References: <1993Nov7.161039.2127@vms.huji.ac.il>

Show Full Headers
Complete Article Headers
X-Google-Language: ENGLISH,ASCII-7-bit
X-Google-Thread: 103fe7,8acfd415000b5ac9
X-Google-Attributes: gid103fe7,public
X-Google-ArrivalTime: 1993-11-08 04:14:14 PST
Newsgroups: bionet.software.gcg
Path: arc1-ca.pugleaf.net!gmd.de!xlink.net!howland.reston.ans.net!pipex!uknet!mcsun!news.funet.fi!convex!harper
From: harper@convex.csc.FI (Rob Harper)
Subject: Re: BLASTMAL & TOFASTA
Message-ID: <1993Nov8.115856.22527@funet.fi>
Sender: usenet@funet.fi (#Kotilo NEWS system )
Nntp-Posting-Host: convex.csc.fi
Organization: Finnish University and Research Network FUNET
References: <1993Nov7.161039.2127@vms.huji.ac.il>
Date: Mon, 8 Nov 1993 11:58:56 GMT
Lines: 55