[Bio-srs] Uniprot and EMBL question

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#100

From: Iain Wallace
Date: Mon, 10 Oct 2005 12:57

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Hi,

I am trying to return the embl entries for a list of uniprot entries.
I use the following command.
getz '(@testing > embl)'
where the file testing contains:
uniprot:CYGB_MOUSE
uniprot:GLB1_SCAIN

The output is:
EMBL:AK019410
EMBL:MMU315163
EMBL:BC055040

Is there any way of viewing the Uniprot ID's aswell as the EMBL ID;
My ideal output would be
EMBL:AK019410    UNIPROT:CYGB_MOUSE
EMBL:MMU315163 UNIPROT:CYGB_MOUSE
EMBL:BC055040     UNIPROT:CYGB_MOUSE

I have tried getz '(@testing > embl) > uniprot'
but this only returns one entry, rather than three..

I want to parse out the results into individual files according to the
uniprot id.

I believe it is possible using views and wgetz, but I would prefer not
to use wgetz

Any help would be greatly appreciated.

Iain

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From: Iain Wallace <iain.m.wallace@gmail.com>
Newsgroups: bionet.software.srs
Subject: [Bio-srs] Uniprot and EMBL question
Date: Mon, 10 Oct 2005 13:57:15 +0100
Organization: BIOSCI/IUBio, Biology Dept., Indiana University
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