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Article #112Re: about hyperlinking to an SRS server
From: Tim Hulsen
Date: Mon, 10 Dec 2001 10:19
Date: Mon, 10 Dec 2001 10:19
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3174 bytes
mlush@hgmp.mrc.ac.uk (Mr. M.J. Lush) wrote in message news:<9sina3$5bv$1@niobium.hgmp.mrc.ac.uk>... > In article <9lj7lr$687$1@snic.vub.ac.be>, > Guy Bottu <gbottu@bigben.vub.ac.be> wrote: > > Dear colleages, > > > >I do not know how many of you use hypertext pages that contain > >hyperlinks pointing to an SRS server. I mean links like > ><A HREF="http://ben.vub.ac.be/srs6bin/wgetz?-e+[swissprot:papa_carpa]"> > >PAPA_CARPA</A>>From SRS version 6.1.1 on this retrieves a page with the > >entry a simple text instead of parsed text with hyperlinks inserted. > >Did you also notice this ? I have send a message to the SRS support. > > If you link to:- > > <http://black.vub.ac.be/srs6bin/wgetz?-id+SmGk1HYVvM+-e+[SWISSPROT: > 'PAPA_CARPA']> > > You can get html parsing, exactly what 'SmGk1HYVvM' means > and how stable it is I have no idea (I've found it very hard to find > good documentation on wgetz) if you add +-view+SwissEntry to the > end of the line you get the full funkey hypertext. > > Personally I have the opposite problem, I want to get the > old text file for simple perl parsing and very few sites seem to > provide this. When using wgetz, the standard output format is * Names only *. It is possible to change the view by adding -view+NAMEOFVIEW to the URL. About the id: this is used for the session log (to remind the queries you did and which views you used). It is better to use -newId in links. So, for example, a link which gives the output in the * Complete entries * view would look like: <a HREF="http://ben.vub.ac.be/srs6bin/wgetz?-newId+-e+[swissprot:papa_carpa]+-view+*%20Complete%20entries%20*>PAPA_CARPA</a>. By the way, the SRS documentation contains a chapter about wgetz (in 6.1.3.: Administrator's Guide 15.2). Typing 'wgetz -help' may also be useful. Regards, Tim Hulsen.
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fa6ec,716346d01009d8ce X-Google-Attributes: gidfa6ec,public X-Google-ArrivalTime: 2001-12-10 02:19:46 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!newsfeed.stanford.edu!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: thulsen@hotmail.com (Tim Hulsen) Newsgroups: bionet.software.srs Subject: Re: about hyperlinking to an SRS server Date: 10 Dec 2001 10:19:43 -0000 Organization: http://groups.google.com/ Lines: 42 Sender: mod-srs@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <8d8056c8.0112070122.5e7c7fde@posting.google.com> References: <9lj7lr$687$1@snic.vub.ac.be> <9sina3$5bv$1@niobium.hgmp.mrc.ac.uk> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 8bit X-Trace: niobium.hgmp.mrc.ac.uk 1007979585 313 193.62.192.80 (10 Dec 2001 10:19:45 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Mon, 10 Dec 2001 10:19:45 +0000 (UTC) X-Auth: PGPMoose V1.1 PGP bionet.software.srs iQCVAwUAPBSMPKCIqsWvyF5FAQEfhwP+MkoZEPlBoVvBxFUns8wEC8VHOnKir4Ct IdCSxeviqDm+i+xMC5yhsEVy/VZMOd/44mx1fVsJwUlHKWBRIhlZVheXPswxH/1R FKO7M/bLQvbcSC6oCdZbQtq1oe1mGbpdxUeD1NNgrD+NrJ6zXeYeNhr8Sk9W0N+A 93wvar4YGAU= =gKhJ