Article View: bionet.software.srs
Article #122given swissProt IDs searching for CDS sequence
From: Huaichun Wang
Date: Mon, 13 May 2002 09:41
Date: Mon, 13 May 2002 09:41
12 lines
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2687 bytes
Sir, I have a list of 5126 protein sequences with swissprot IDs or accession number and I want to get their corresponding coding sequences. Although I can search individually for the proteins using SRS and then get its EMBL entry from "Database cross-references", it is not practical for thousands of the sequences to be extracted. I wonder is there an automatic way to do this task? Huaichun Wang ---
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fa6ec,b06a95723783309,start X-Google-Attributes: gidfa6ec,public X-Google-ArrivalTime: 2002-05-13 02:41:20 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!newsfeed.stanford.edu!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: hcwang@science.uottawa.ca (Huaichun Wang) Newsgroups: bionet.software.srs Subject: given swissProt IDs searching for CDS sequence Date: 13 May 2002 10:41:17 +0100 Organization: University of Ottawa Lines: 13 Sender: mod-srs@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <3CDBECD1.A71DFF39@science.uottawa.ca> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 1021282879 3180 193.62.192.80 (13 May 2002 09:41:19 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Mon, 13 May 2002 09:41:19 +0000 (UTC) X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 5F22317B85 for <bio-srs@net.bio.net>; Fri, 10 May 2002 16:59:24 +0100 (BST) X-Received: from alfred.cc.uottawa.ca (alfred.cc.uottawa.ca [137.122.6.40]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id B9F7617AB5 for <bio-srs@net.bio.net>; Fri, 10 May 2002 16:59:21 +0100 (BST) X-Received: from science.uottawa.ca (sammy.science.uottawa.ca [137.122.43.76]) by alfred.cc.uottawa.ca (8.9.1/8.9.1) with ESMTP id LAA08326 for <bio-srs@net.bio.net>; Fri, 10 May 2002 11:58:58 -0400 X-Received: from Spooler by science.uottawa.ca (Mercury/32 v3.31) ID MO00158C; 10 May 02 11:58:59 -0400 X-Received: from spooler by science.uottawa.ca (Mercury/32 v3.31); 10 May 02 11:58:46 -0400 X-Received: from science.uottawa.ca (137.122.147.108) by science.uottawa.ca (Mercury/32 v3.31) with ESMTP ID MG00158B; 10 May 02 11:58:43 -0400 X-Accept-Language: en X-To: bio-srs@net.bio.net, hcwang@science.uottawa.ca X-Auth: PGPMoose V1.1 PGP bionet.software.srs iQCVAwUAPN+KMqCIqsWvyF5FAQHfNwP8DjxMz0GH2bVUiYg08GiaQbB9FJO9XkxL OiFrvnxQnAWGLFlmIt/NefezTUPD6liYA9p164WChf+Tm37DqHeBNuKvh26rWRmd P2Dj3pAxChgEqOICJCnveXktFJpFe1iG64rTgH8EAevKRJt6yyra2epfS4PoXKUG Z+8ew+B+m68= =gamS