Article View: bionet.software.srs
Article #131RE: database cross-reference
From: Elisabeth Gasteiger
Date: Tue, 09 Jul 2002 08:59
Date: Tue, 09 Jul 2002 08:59
583 lines
30264 bytes
30264 bytes
Dear Huaichun,
> Sir,
> for each protein sequence entry in swall, there is a database
> cross-reference to EMBL entries (the line begining with
> "DR EMBL;".
Actually, this is not true for all entries in SWALL (SWISS-PROT,
TrEMBL, TrEMBL_new) - there are also entries describing sequences
that have been determined on amino acid level only.
In those cases there is no link to the nucleotide sequence database.
Example: http://us.expasy.org/cgi-bin/niceprot.pl?P29361
> My question is when there are several
> cross-refered EMBL entries for one swissprot entry, what
> is the difference between these entries; Do the nucleotide entries
> have the same sequences?
No, not necessarily.
One of the primary goals of SWISS-PROT is to be non-redundant, e.g. to
have one SWISS-PROT entry per gene, even if there are several
sequencing reports in the DNA databases.
Some of these underlying EMBL entries may have identical sequences,
others only refer to fragments, to one or several exons, and there
may be sequencing conflicts or polymorphisms.
See the SWISS-PROT user manual,
http://www.expasy.org/sprot/userman.html#whatis
>
> b) Minimal redundancy
>
> Many sequence databases contain, for a given protein sequence, separate
> entries which correspond to different literature reports. In SWISS-PROT we try
> as much as possible to merge all these data so as to minimize the redundancy
> of the database. If conflicts exist between various sequencing reports, they are
> indicated in the feature table of the corresponding entry.
If you look at the feature table of TAP1_HUMAN
http://us.expasy.org/cgi-bin/niceprot.pl?tAP1_HUMAN#features
you will see several variants:
FT VARIANT 333 333 I -> V (IN TAP1*02011/PSF1B,
FT TAP1*0301/PSF1C, TAP1*0401 AND
TAP1*X).
FT /FTId=VAR_000092.
FT VARIANT 370 370 A -> V (IN TAP1*X).
FT /FTId=VAR_013151.
FT VARIANT 458 458 V -> L (IN TAP1*0401).
FT /FTId=VAR_013152.
FT VARIANT 518 518 V -> I (IN TAP1*X).
FT /FTId=VAR_013153.
FT VARIANT 637 637 D -> G (IN TAP1*02011/PSF1B, TAP1*0401
FT AND TAP1*X).
FT /FTId=VAR_000093.
FT VARIANT 648 648 R -> Q (IN TAP1*0401).
FT /FTId=VAR_013154.
FT VARIANT 659 659 R -> Q (IN A LUNG CANCER CELL LINE
FT DEFICIENT IN MHC CLASS I
PRESENTATION).
FT /FTId=VAR_013173.
>
> For example, when I used SRS to search for TAP1_HUMAN in swall, I got
> a protein sequence entry. There are 10 EMBL entries cross-refered
> to this protein. They are:
> DR EMBL; X66401; CAA47025.1; -.
> DR EMBL; X57521; CAA40740.1; -.
> DR EMBL; X57522; CAA40741.1; ALT_INIT.
> DR EMBL; L21204; AAC12902.1; -.
> DR EMBL; L21205; AAC12903.1; -.
> DR EMBL; L21206; AAC12904.1; -.
> DR EMBL; L21207; AAC12905.1; -.
> DR EMBL; L21208; AAC12906.1; -.
> DR EMBL; X87344; CAA60785.1; -.
> DR EMBL; S70274; AAD14056.1; -.
>
> What are the same and difference among these 10 EMBL entries?
You can use SRS (e.g. srs.ebi.ac.uk) to retrieve those 10 entries from
EMBL
Accession number: X66401|X57521|.....
and then launch clustalw to perform a multiple alignment of all 10
sequences
(see below).
I hope this helps.
Best regards
Elisabeth Gasteiger
SEVMHC
------------------------------------------------------------
HSMHCAPG
------------------------------------------------------------
HSRING4
GCGGCCGCTTTCGATTTCGCTTTCCCCTAAATGGCTGAGCTTCTCGCCAGCGCAGGATCA
HSTAP1A
------------------------------------------------------------
HSTAP1B
------------------------------------------------------------
HSTAP1C
------------------------------------------------------------
HSTAP1D
------------------------------------------------------------
HSTAP1E
------------------------------------------------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
---GATCAGGCTCTTTCTCTCTGTAAACCTGCTCCCATGGCATTCTTTTCTGCTTCAATT
HSMHCAPG
------------------------------------------------------------
HSRING4
GCCTGTTCCTGGGACTTTCCGAGAGCCCCGCCCTCGTTCCCTCCCCCAGCCGCCAGTAGG
HSTAP1A
------------------------------------------------------------
HSTAP1B
------------------------------------------------------------
HSTAP1C
------------------------------------------------------------
HSTAP1D
------------------------------------------------------------
HSTAP1E
------------------------------------------------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
CAGTCCATCCCTGACCACCCACCCAGCCACCCATGCTGGAAATCTGAGATATCTTTGACT
HSMHCAPG
------------------------------------------------------------
HSRING4
GGAGGACTCGGCGGTACCCGGAGCTTCAGGCCCCACCGGGGCGCGGAGAGTCCCAGACCC
HSTAP1A
------------------------------------------------------------
HSTAP1B
------------------------------------------------------------
HSTAP1C
------------------------------------------------------------
HSTAP1D
------------------------------------------------------------
HSTAP1E
------------------------------------------------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
CCTCCACCTTCCCACTCCCACAGCTAATCAGTAGCCAAACCCTTTAGATTCTACTTCCTA
HSMHCAPG
-------------------------------TCGACGGGATCACGAGGTCAGGAGATCGA
HSRING4
GGCCGGGACCGGGACGGCGTCCGAGTGCCAATGGCTAG-CTCTAGGTGTCCCGCTCCCCG
HSTAP1A
------------------------------ATGGCTAG-CTCTAGGTGTCCCGCTCCCCG
HSTAP1B
------------------------------ATGGCTAG-CTCTAGGTGTCCCGCTCCCCG
HSTAP1C
------------------------------ATGGCTAG-CTCTAGGTGTCCCGCTCCCCG
HSTAP1D
------------------------------ATGGCTAG-CTCTAGGTGTCCCGCTCCCCG
HSTAP1E
------------------------------ATGGCTAG-CTCTAGGTGTCCCGCTCCCCG
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
ATTATCTTGATATTCTATCTCCTCTGCCTCCTCTAATTATGACTTAATTCAGGCTCTTAT
HSMHCAPG
GA------------CCATCCTGACTACCACGGTGAA------------------------
HSRING4
--------------CGGGTGCCGCTGCCTCCCCGGA----------------GCT-----
HSTAP1A
--------------CGGGTGCCGCTGCCTCCCCGGA----------------GCT-----
HSTAP1B
--------------CGGGTGCCGCTGCCTCCCCGGA----------------GCT-----
HSTAP1C
--------------CGGGTGCCGCTGCCTCCCCGGA----------------GCT-----
HSTAP1D
--------------CGGGTGCCGCTGCCTCCCCGGA----------------GCT-----
HSTAP1E
--------------CGGGTGCCGCTGCCTCCCCGGA----------------GCT-----
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
TATCTGTCATTTAAATTATTGCTGTATTGCTACAGGAGTGGTGTGTATATGTGCAACTGT
HSMHCAPG
--ACCCCGTCTCTACTAAAAAAAATACAAAAAA---------------------------
HSRING4
--TCTCTCGCATGGCTGGGGACAGTACTGCTAC---------------------------
HSTAP1A
--TCTCTCGCATGGCTGGGGACAGTACTGCTAC---------------------------
HSTAP1B
--TCTCTCGCATGGCTGGGGACAGTACTGCTAC---------------------------
HSTAP1C
--TCTCTCGCATGGCTGGGGACAGTACTGCTAC---------------------------
HSTAP1D
--TCTCTCGCATGGCTGGGGACAGTACTGCTAC---------------------------
HSTAP1E
--TCTCTCGCATGGCTGGGGACAGTACTGCTAC---------------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
TCATCTTGGTATGCTATAGACTCTTGCCCAGCAGTTTTGCCTCAATTCTTTAAAAGCTCC
HSMHCAPG
----------------------CTAGCCAGG---------CATGGTGGC-----------
HSRING4
--------------------TTCTCGCCGA----------CTGGGTGCT------GCTCC
HSTAP1A
--------------------TTCTCGCCGA----------CTGGGTGCT------GCTCC
HSTAP1B
--------------------TTCTCGCCGA----------CTGGGTGCT------GCTCC
HSTAP1C
--------------------TTCTCGCCGA----------CTGGGTGCT------GCTCC
HSTAP1D
--------------------TTCTCGCCGA----------CTGGGTGCT------GCTCC
HSTAP1E
--------------------TTCTCGCCGA----------CTGGGTGCT------GCTCC
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
AGTTCATTGTTTGAAATATCAATCAGAACATTTTTTCCAAAATGCTAAAATGATTGTCAT
HSMHCAPG
-GGGCGCC--------TGTAGTTCCAGCTACT----------------------------
HSRING4
GGACCGC----------GCTGCCCCGCATATTCTCCCTG---------------------
HSTAP1A
GGACCGC----------GCTGCCCCGCATATTCTCCCTG---------------------
HSTAP1B
GGACCGC----------GCTGCCCCGCATATTCTCCCTG---------------------
HSTAP1C
GGACCGC----------GCTGCCCCGCATATTCTCCCTG---------------------
HSTAP1D
GGACCGC----------GCTGCCCCGCATATTCTCCCTG---------------------
HSTAP1E
GGACCGC----------GCTGCCCCGCATATTCTCCCTG---------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
TCCCCAGTTTTAATATCTCTATCATCTGCTAAGTAAAAGCAAGCTCCTCCTTGTGGCGTA
HSMHCAPG
---CGGGAGGCTGAGGAGGGAGAA--TGGCGTGAA------------CCCGGGAGGCGGA
HSRING4
---CTGGTGCCCACCGCGCTGCCA-CTGCTCCGGG------------TCTGGGCGGTGGG
HSTAP1A
---CTGGTGCCCACCGCGCTGCCA-CTGCTCCGGG------------TCTGGGCGGTGGG
HSTAP1B
---CTGGTGCCCACCGCGCTGCCA-CTGCTCCGGG------------TCTGGGCGGTGGG
HSTAP1C
---CTGGTGCCCACCGCGCTGCCA-CTGCTCCGGG------------TCTGGGCGGTGGG
HSTAP1D
---CTGGTGCCCACCGCGCTGCCA-CTGCTCCGGG------------TCTGGGCGGTGGG
HSTAP1E
---CTGGTGCCCACCGCGCTGCCA-CTGCTCCGGG------------TCTGGGCGGTGGG
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
GCAGGGCCCACGTGATCTGGCCCTTGCCCGAATTTGTAGCTTATCACAACATCCTTCTAC
HSMHCAPG
GCTT-GCAG--------TGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAG
HSRING4
CCTGAGCCG-------CTGGGCCGTGCTCTGGCTGGGGGCCTG---CGGGGTCCTCAGGG
HSTAP1A
CCTGAGCCG-------CTGGGCCGTGCTCTGGCTGGGGGCCTG---CGGGGTCCTCAGGG
HSTAP1B
CCTGAGCCG-------CTGGGCCGTGCTCTGGCTGGGGGCCTG---CGGGGTCCTCAGGG
HSTAP1C
CCTGAGCCG-------CTGGGCCGTGCTCTGGCTGGGGGCCTG---CGGGGTCCTCAGGG
HSTAP1D
CCTGAGCCG-------CTGGGCCGTGCTCTGGCTGGGGGCCTG---CGGGGTCCTCAGGG
HSTAP1E
CCTGAGCCG-------CTGGGCCGTGCTCTGGCTGGGGGCCTG---CGGGGTCCTCAGGG
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
CCCCCATTACCTCCTATTATACAGGAACACCCAAGCGACCTTCACAACATTCATATCAAC
HSMHCAPG
CGAGACTCCGTCTCAAAAAAAAAAAAAAAA------------------------------
HSRING4
CAACGGTTGGCTCC--------AAGAGCG-------------------------------
HSTAP1A
CAACGGTTGGCTCC--------AAGAGCG-------------------------------
HSTAP1B
CAACGGTTGGCTCC--------AAGAGCG-------------------------------
HSTAP1C
CAACGGTTGGCTCC--------AAGAGCG-------------------------------
HSTAP1D
CAACGGTTGGCTCC--------AAGAGCG-------------------------------
HSTAP1E
CAACGGTTGGCTCC--------AAGAGCG-------------------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
TAGTACACAGGGTCTCCAAAGAGGACCTCTGGATGCCTGTGATCTTTGTACTTCTGC-CT
HSMHCAPG
-AAAAAAAAAAAAAAAAAAAAAAAGA----AAAGGATTGTAAG--AGTTACTGTTACATT
HSRING4
-AAAACGCAGG-TGCCCAGGGCTGGC---TGGCTGCTTTGAAGCCATTAGCTGCGGCACT
HSTAP1A
-AAAACGCAGG-TGCCCAGGGCTGGC---TGGCTGCTTTGAAGCCATTAGCTGCGGCACT
HSTAP1B
-AAAACGCAGG-TGCCCAGGGCTGGC---TGGCTGCTTTGAAGCCATTAGCTGCGGCACT
HSTAP1C
-AAAACGCAGG-TGCCCAGGGCTGGC---TGGCTGCTTTGAAGCCATTAGCTGCGGCACT
HSTAP1D
-AAAACGCAGG-TGCCCAGGGCTGGC---TGGCTGCTTTGAAGCCATTAGCTGCGGCACT
HSTAP1E
-AAAACGCAGG-TGCCCAGGGCTGGC---TGGCTGCTTTGAAGCCATTAGCTGCGGCACT
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
ACCCTTTGCCCTGGCGTGTTTTTCTCTTCCTTCATGTTCTGCTGGCCAAATTGTTTTTCC
HSMHCAPG
---TTCTGGCCTAC-------TACCTT---------------------------------
HSRING4
GGGCTTGGCCCTGCCGGGACTTGCCTT---------------------------------
HSTAP1A
GGGCTTGGCCCTGCCGGGACTTGCCTT---------------------------------
HSTAP1B
GGGCTTGGCCCTGCCGGGACTTGCCTT---------------------------------
HSTAP1C
GGGCTTGGCCCTGCCGGGACTTGCCTT---------------------------------
HSTAP1D
GGGCTTGGCCCTGCCGGGACTTGCCTT---------------------------------
HSTAP1E
GGGCTTGGCCCTGCCGGGACTTGCCTT---------------------------------
HSY3
------------------------------------------------------------
S70274
------------------------------------------------------------
HSEVMHC
TTCAAGTCTTAGGAGCCTGCCTGATTATGTTCCTCCTATTCCGCATCCTCATAAAATTAC
HSMHCAPG
---------TAAAA----TTCCTGTTGCATTTCTTTGTATTTACAA--------------
HSRING4
-----GTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGC----------------
HSTAP1A
-----GTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGC----------------
HSTAP1B
-----GTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGC----------------
HSTAP1C
-----GTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGC----------------
HSTAP1D
-----GTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGC----------------
HSTAP1E
-----GTTCCGAGAGCTGATCTCATGGGGAGCCCCCGGGTCCGC----------------
HSY3
------------------------------------GGGTCCGC----------------
S70274
------------------------------------------------------------
HSEVMHC
TGCGACTTCCAAAACACTTGGCACATTCTTATTTGAATACATTACATTGTTGTGTAATTA
HSMHCAPG
----------------------------------GGAAA---------------------
HSRING4
----------------------------------GGATA---------------------
HSTAP1A
----------------------------------GGATA---------------------
HSTAP1B
----------------------------------GGATA---------------------
HSTAP1C
----------------------------------GGATA---------------------
HSTAP1D
----------------------------------GGATA---------------------
HSTAP1E
----------------------------------GGATA---------------------
HSY3
----------------------------------GGATA---------------------
S70274
------------------------------------------------------------
HSEVMHC
TCCCTTGGCCCCCTCCCCCAGCACTAGACTCTAAGCTCTTTGAAGGCAGACTATGCCTAT
HSMHCAPG
--------------------AGACTGAACT--------------------TT--------
HSRING4
--------------------GCACCAGGCT-------------------ACT--------
HSTAP1A
--------------------GCACCAGGCT-------------------ACT--------
HSTAP1B
--------------------GCACCAGGCT-------------------ACT--------
HSTAP1C
--------------------GCACCAGGCT-------------------ACT--------
HSTAP1D
--------------------GCACCAGGCT-------------------ACT--------
HSTAP1E
--------------------GCACCAGGCT-------------------ACT--------
HSY3
--------------------GCACCAGGCT-------------------ACT--------
S70274
------------------------------------------------------------
HSEVMHC
TCATCTTTGTATTTCTAGCCCTGGGCCCAACACCCAGAATTTCTTGTATTTTCAATATAT
HSMHCAPG
------------------TTCTCATCAAAACTAGCT-------TTTTTCTCACAGGTTAA
HSRING4
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
HSTAP1A
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
HSTAP1B
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
HSTAP1C
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
HSTAP1D
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
HSTAP1E
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
HSY3
-----------------GCACTGGGGAAGTCACCCT--ACCGCCTTCGTTGTCAGT-TAT
S70274
------------------------------------------------------------
HSEVMHC
GTCTGCCAAATGAATTAGAGCTAATGCCTGAAGGAGAATAAGTTTTTTTGAGAAAGAGGA
HSMHCAPG
ACTT-------------GCACCAATGTCTGC-----------------------------
HSRING4
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
HSTAP1A
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
HSTAP1B
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
HSTAP1C
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
HSTAP1D
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
HSTAP1E
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
HSY3
GC--------------AGCGGCACTGCCCGCAGCAG------------------------
S70274
------------------------------------------------------------
HSEVMHC
AGAGCCAGGAGGGAGGAGAAGGCAGGGTCCGAAGAGCCCTGGGGGTTTA-CTTGGGGAAG
HSMHCAPG
------------------------------------TCTTTTTTTTTAATGTTTTTGGTA
HSRING4
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
HSTAP1A
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
HSTAP1B
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
HSTAP1C
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
HSTAP1D
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
HSTAP1E
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
HSY3
------------------------------------CCCTGTGGCACAA-ACTCGGGAGC
S70274
------------------------------------------------------------
HSEVMHC
ATGCGGTTCCCCATTGCAGCATTCTGCCAGGAGGTGGCACTGCTCTGAAGAGCCAGCTGG
HSMHCAPG
CTCTGGGCAGACTTCAG-----TTTTTTAAAAAA-----------TAAAGATTCTA-ATG
HSRING4
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
HSTAP1A
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
HSTAP1B
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
HSTAP1C
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
HSTAP1D
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
HSTAP1E
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
HSY3
CTCTGGGTGCCCGGCG---------GTCAGGGCG-------GCTCTGGAAACCCTGTGCG
S70274
------------------------------------------------------------
HSEVMHC
TCG-CTTACAGACTGAGGCTGACAGCTTGAAACCAAAGAGGGAACTCCACCAGGAAGCAA
HSMHCAPG
CAGCTATCTTGGCAT------------TCCCTTTAAATAC------CTGTC---------
HSRING4
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
HSTAP1A
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
HSTAP1B
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
HSTAP1C
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
HSTAP1D
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
HSTAP1E
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
HSY3
TCGGCTTCTAGGCTG----------CCTGGGCTCGGAGACG---CGCCGCC---------
S70274
------------------------------------------------------------
HSEVMHC
CATTCCTCCACTGGGCTTCCCAGCCCAGTTACATGCCATACTCTGCCCTGGTCAAACAGC
HSMHCAPG
------TTAAC-----CTCCTACTTTTATT-----TCCTACTCCTTTCCACACACATGCA
HSRING4
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
HSTAP1A
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
HSTAP1B
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
HSTAP1C
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
HSTAP1D
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
HSTAP1E
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
HSY3
-----TCTCGCTG---TTCCTGGTCCTGGTG---GTCCTCTCCTCTCTTGGGGAGATGGC
S70274
------------------------------------------------------------
HSEVMHC
CAAGTCTTCAGGAGGTTACTGGCCCCAGGCGTCTCCCCAGTGACTGATGATGTTAAACCC
HSMHCAPG
--
-----------------------------------------------------------------
Elisabeth Gasteiger
Swiss Institute of Bioinformatics
CMU - 1, rue Michel Servet Tel. (+41 22) 702 58 75
CH - 1211 Geneva 4 Switzerland Fax (+41 22) 702 58 58
Elisabeth.Gasteiger@isb-sib.ch http://www.expasy.org/
-----------------------------------------------------------------
---
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fa6ec,448e1e8158db7d55,start X-Google-Attributes: gidfa6ec,public X-Google-ArrivalTime: 2002-07-09 01:59:38 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!newsfeed.stanford.edu!cyclone.bc.net!news.maxwell.syr.edu!howland.erols.net!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: Elisabeth.Gasteiger@isb-sib.ch (Elisabeth Gasteiger) Newsgroups: bionet.software.srs Subject: RE: database cross-reference Date: 9 Jul 2002 09:59:35 +0100 Organization: BIOSCI/MRC Human Genome Mapping Project Resource Centre Lines: 584 Sender: mod-srs@hgmp.mrc.ac.uk Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <3D299CB1.2A130E68@isb-sib.ch> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: niobium.hgmp.mrc.ac.uk 1026205175 7214 193.62.192.80 (9 Jul 2002 08:59:35 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Tue, 9 Jul 2002 08:59:35 +0000 (UTC) X-Received: from localhost (localhost [127.0.0.1]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 2DC8217AE5 for <bio-srs@net.bio.net>; Mon, 8 Jul 2002 15:10:12 +0100 (BST) X-Received: from expasy-ng.isb-sib.ch (expasy-f.unige.ch [192.33.215.142]) by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 7D42B17A56 for <bio-srs@net.bio.net>; Mon, 8 Jul 2002 15:09:23 +0100 (BST) X-Received: from isb-sib.ch ([192.33.215.130]) (authenticated bits=0) by expasy-ng.isb-sib.ch (8.12.3/8.12.0) with ESMTP id g68E9HGn020244 (version=TLSv1/SSLv3 cipher=RC4-MD5 bits=128 verify=NOT); Mon, 8 Jul 2002 16:09:17 +0200 X-Reply-To: Elisabeth.Gasteiger@isb-sib.ch X-Accept-Language: en X-To: bio-srs@net.bio.net X-Cc: hcwang@science.uottawa.ca X-Razor-id: 80c6b9a808561ecfa46a1a82f6f2d75642d5ad71 X-Auth: PGPMoose V1.1 PGP bionet.software.srs iQCVAwUAPSql76CIqsWvyF5FAQFvKQQAtUmy6AJDPnI890mZ3eqgFoU6CE4AYyEX RFUHmoKWf/3iGfMJIuDIKlLLRv7nmKxKLr6YoQgPvMECgw18oYMv3vXCVcnaaL2S u0v9u4XjdGKwqRNjctNcoMjoDpOXnUfgwwlG4JdX76KrCfjo9fB3W+75CBBfdK7h rQj5sBVQ650= =Xm+X