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Article #50Re: PIR entries give bad sequence formats
From: Peter Rice
Date: Thu, 04 Nov 1999 00:00
Date: Thu, 04 Nov 1999 00:00
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gilbertd@bio.indiana.edu (Don Gilbert) writes: > It depends on which PIR format - I have written an SRS > parser for PIR's CODATA format (common in US), but I would > guess you need one for the NBRF format (common in Europe). > (see http://iubio.bio.indiana.edu/srs/ for former). Yup, this is the NBRF format (separate .ref and .seq files) -- ---------------------------------------------------------------------- Peter Rice | Informatics Division, The Sanger Centre, E-mail: pmr@sanger.ac.uk | Wellcome Trust Genome Campus, Tel: (44) 1223 494967 | Hinxton, Cambridge, CB10 1SA, England Fax: (44) 1223 494919 | URL: http://www.sanger.ac.uk/Users/pmr/
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fa6ec,2c095ca78e673974 X-Google-Attributes: gidfa6ec,public From: Peter Rice <pmr@sanger.ac.uk> Subject: Re: PIR entries give bad sequence formats Date: 1999/11/04 Message-ID: <subd7tqxejh.fsf@europa.sanger.ac.uk> X-Deja-AN: 544494762 References: <subeme6xjtz.fsf@europa.sanger.ac.uk> <7vsfl8$jvu$1@flotsam.uits.indiana.edu> X-Complaints-To: news@hgmp.mrc.ac.uk X-Trace: niobium.hgmp.mrc.ac.uk 941742371 24802 193.62.207.78 (4 Nov 1999 19:06:11 GMT) Organization: The Sanger Centre NNTP-Posting-Date: 4 Nov 1999 19:06:11 GMT Newsgroups: bionet.software.srs