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Article #62Howto make a "big" link ?
From: Guy Bottu
Date: Fri, 19 Dec 2003 19:36
Date: Fri, 19 Dec 2003 19:36
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Dear colleagues, SRS is quite performant, but it seems I have discovered a case where it does not work. I am trying to make a "Link" between the databank Rfam and "EMBL release" (based on the EMBL accession numbers cross-referenced in the Rfam entries). Whatever I try, I keep getting a "malloc" error. I tried : $Link:[$RFAM_DB to:$EMBLREL_DB token:embllink toField:$DF_Accession] and : $Link:[$RFAM_DB to:$EMBLREL_DB fromField:$DF_EMBLlink toField:$DF_Accession] $Field:[$DF_EMBLlink index:str indexToken:embllink] and : $RFAM_DB parallelType:chunk partN:8 Link:[$RFAM_DB to:$EMBLREL_DB fromField:$DF_EMBLlink toField:$DF_Accession partN:8] $Field:[$DF_EMBLlink index:str indexToken:embllink sliceCount:8] But no way, even making the index for the EMBLlink field crashes. I suspect the problem is that some entries have too many links (the entry FR00005 for tRNA has more than 58000 references to EMBL !). Someone an idea ? By the way, I have another problem. According to the manual it is possible to make an index for a field without making it visible in the user interface, for the purpose of using that field index to make a link index of type "link". I tried the "Field" attributes "index:link" and "isSystem:y", but none of either works (the field is simply not indexed). Sincerely Guy Bottu
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From: Guy Bottu <gbottu@black.vub.ac.be>
Newsgroups: bionet.software.srs
Subject: Howto make a "big" link ?
Date: 19 Dec 2003 19:36:22 -0000
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