Article View: bionet.software.www
Article #215electrostatic grid modelling using VMD
From: yusdy82
Date: Thu, 21 Aug 2008 19:16
Date: Thu, 21 Aug 2008 19:16
23 lines
2408 bytes
2408 bytes
Dear all, I am a beginner for VMD software, and currently try to practice VMD to get electrostatic grid of protein of my interest. I try to use the example of potsel.tcl usage in (http://www.ks.uiuc.edu/Research/vmd/script_library/) source potsel.tcl mol pdbload 1bnf set sel [atomselect top "not water"] potSel $sel 63 2 80 But, it did not work out, and written couldn't execute "touch": no such file or directory Do you know how I can get the "touch" file? If you have more examples for me, I will really appreciate it. Thanks a lot in advance. Best regards, Yusdy
Technical Details
Message-ID:
<mailman.1227.1219363880.3533.bio-www@net.bio.net>Path:
arc1-ca.pugleaf.net!g2news1.google.com!news4.google.com!out01b.usenetserver.com!news.usenetserver.com!in04.usenetserver.com!news.usenetserver.com!newsfeed.yul.equant.net!newspeer.monmouth.com!newsswitch.lcs.mit.edu!elk.ncren.net!news.purdue.edu!not-for-mailReferences:
<mailman.307.1216133933.3531.bio-www@net.bio.net>Show Full Headers
Complete Article Headers
X-Google-Thread: 111744,526efef7d0a78ad4,start X-Google-Attributes: gid111744,domainid0,public,usenet X-Google-Language: ENGLISH,ASCII-7-bit Path: arc1-ca.pugleaf.net!g2news1.google.com!news4.google.com!out01b.usenetserver.com!news.usenetserver.com!in04.usenetserver.com!news.usenetserver.com!newsfeed.yul.equant.net!newspeer.monmouth.com!newsswitch.lcs.mit.edu!elk.ncren.net!news.purdue.edu!not-for-mail From: yusdy82@MIT.EDU Newsgroups: bionet.software.www Subject: electrostatic grid modelling using VMD Date: Thu, 21 Aug 2008 15:16:55 -0400 Organization: BIOSCI/IUBio, Biology Dept., Indiana University Lines: 24 Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <mailman.1227.1219363880.3533.bio-www@net.bio.net> References: <mailman.307.1216133933.3531.bio-www@net.bio.net> NNTP-Posting-Host: kalo.bio.indiana.edu Mime-Version: 1.0 Content-Type: text/plain; charset=ISO-8859-1; format="flowed" Content-Transfer-Encoding: 7bit X-Trace: mailhub227.itcs.purdue.edu 1219363908 19405 129.79.224.26 (22 Aug 2008 00:11:48 GMT) X-Complaints-To: news@purdue.edu NNTP-Posting-Date: Fri, 22 Aug 2008 00:11:48 +0000 (UTC) To: bio-www@magpie.bio.indiana.edu X-Envelope-From: yusdy82@MIT.EDU In-Reply-To: <mailman.307.1216133933.3531.bio-www@net.bio.net> Content-Disposition: inline User-Agent: Internet Messaging Program (IMP) H3 (4.0.3) X-Scanned-By: MIMEDefang 2.42 X-Mailman-Approved-At: Thu, 21 Aug 2008 19:11:18 -0500 X-BeenThere: bio-www@net.bio.net X-Mailman-Version: 2.1.4 Precedence: list X-Auth: PGPMoose V1.1 PGP bionet.software.www iQCVAwUBSK4EKaCIqsWvyF5FAQGZoQQAjLMRinK2XNb2yddg0iOWzPpi8j88b8Nh Mc43u2Ekc2jZl1EB4fnkNqds25TG82wr9/1EHAFP5LhF1XSNfDJnzvn+/M9hrau4 5J9f1pC4LQwj2nl79fNtf0574wABrZ1lFIadvOQ0QesKD2ZDHqpPdpuMURTCiZnq uohLSsidqMY= =vZWT