🚀 go-pugleaf

RetroBBS NetNews Server

Inspired by RockSolid Light RIP Retro Guy

Article View: bionet.software.www
Article #215

electrostatic grid modelling using VMD

#215
From: yusdy82
Date: Thu, 21 Aug 2008 19:16
23 lines
2408 bytes
Dear all,

I am a beginner for VMD software, and currently try to practice VMD to get
electrostatic grid of protein of my interest. I try to use the example of
potsel.tcl usage in (http://www.ks.uiuc.edu/Research/vmd/script_library/)

  source potsel.tcl
  mol pdbload 1bnf
  set sel [atomselect top "not water"]
  potSel $sel 63 2 80

But, it did not work out, and written

couldn't execute "touch": no such file or directory

Do you know how I can get the "touch" file?
If you have more examples for me, I will really appreciate it.

Thanks a lot in advance.


Best regards,
Yusdy
Technical Details
Message-ID: <mailman.1227.1219363880.3533.bio-www@net.bio.net>
Path: arc1-ca.pugleaf.net!g2news1.google.com!news4.google.com!out01b.usenetserver.com!news.usenetserver.com!in04.usenetserver.com!news.usenetserver.com!newsfeed.yul.equant.net!newspeer.monmouth.com!newsswitch.lcs.mit.edu!elk.ncren.net!news.purdue.edu!not-for-mail
References: <mailman.307.1216133933.3531.bio-www@net.bio.net>

Show Full Headers
Complete Article Headers
X-Google-Thread: 111744,526efef7d0a78ad4,start
X-Google-Attributes: gid111744,domainid0,public,usenet
X-Google-Language: ENGLISH,ASCII-7-bit
Path: arc1-ca.pugleaf.net!g2news1.google.com!news4.google.com!out01b.usenetserver.com!news.usenetserver.com!in04.usenetserver.com!news.usenetserver.com!newsfeed.yul.equant.net!newspeer.monmouth.com!newsswitch.lcs.mit.edu!elk.ncren.net!news.purdue.edu!not-for-mail
From: yusdy82@MIT.EDU
Newsgroups: bionet.software.www
Subject: electrostatic grid modelling using VMD
Date: Thu, 21 Aug 2008 15:16:55 -0400
Organization: BIOSCI/IUBio, Biology Dept., Indiana University
Lines: 24
Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net>
Message-ID: <mailman.1227.1219363880.3533.bio-www@net.bio.net>
References: <mailman.307.1216133933.3531.bio-www@net.bio.net>
NNTP-Posting-Host: kalo.bio.indiana.edu
Mime-Version: 1.0
Content-Type: text/plain;
 charset=ISO-8859-1;
 format="flowed"
Content-Transfer-Encoding: 7bit
X-Trace: mailhub227.itcs.purdue.edu 1219363908 19405 129.79.224.26 (22 Aug 2008 00:11:48 GMT)
X-Complaints-To: news@purdue.edu
NNTP-Posting-Date: Fri, 22 Aug 2008 00:11:48 +0000 (UTC)
To: bio-www@magpie.bio.indiana.edu
X-Envelope-From: yusdy82@MIT.EDU
In-Reply-To: <mailman.307.1216133933.3531.bio-www@net.bio.net>
Content-Disposition: inline
User-Agent: Internet Messaging Program (IMP) H3 (4.0.3)
X-Scanned-By: MIMEDefang 2.42
X-Mailman-Approved-At: Thu, 21 Aug 2008 19:11:18 -0500
X-BeenThere: bio-www@net.bio.net
X-Mailman-Version: 2.1.4
Precedence: list
X-Auth: PGPMoose V1.1 PGP bionet.software.www
 iQCVAwUBSK4EKaCIqsWvyF5FAQGZoQQAjLMRinK2XNb2yddg0iOWzPpi8j88b8Nh
 Mc43u2Ekc2jZl1EB4fnkNqds25TG82wr9/1EHAFP5LhF1XSNfDJnzvn+/M9hrau4
 5J9f1pC4LQwj2nl79fNtf0574wABrZ1lFIadvOQ0QesKD2ZDHqpPdpuMURTCiZnq
 uohLSsidqMY= =vZWT