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Article #2281Re: Request: RNA folding prog. w/ ~2.5 kb RNA?
From: Neal Dalton
Date: Tue, 28 Jun 1994 14:40
Date: Tue, 28 Jun 1994 14:40
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Graham Redgrave (gwr@socrates.ucsf.edu) wrote: : We are interested in finding a sub-optimal RNA folding : program for RNA molecules longer than 850, specifically able to : handle at least 25.kb. We have the GCG package, and mfold is : ideal except for its 850 base limit. Modifying mfold is, I think, : a possibility for us, though I don't maintain the source code and : the person who does is currently on leave. In the GCG directory there is a file called gcgsource/include/mfoldblock.inc with a maxn variable set to 850. I'm pretty sure if you change this your limit will go up. I did it for pileup. Neal
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: 103fe7,c0c030fe28d3368d X-Google-Attributes: gid103fe7,public X-Google-Thread: fa6b6,c0c030fe28d3368d X-Google-Attributes: gidfa6b6,public X-Google-ArrivalTime: 1994-06-28 08:09:03 PST Newsgroups: bionet.software,bionet.software.gcg Path: arc1-ca.pugleaf.net!bga.com!news.sprintlink.net!news.onramp.net!convex!news.duke.edu!news-feed-1.peachnet.edu!umn.edu!data.med.umn.edu!nrd From: nrd@data.med.umn.edu (Neal Dalton) Subject: Re: Request: RNA folding prog. w/ ~2.5 kb RNA? Message-ID: <Cs43Fx.M8K@news.cis.umn.edu> Followup-To: bionet.software,bionet.software.gcg Sender: news@news.cis.umn.edu (Usenet News Administration) Nntp-Posting-Host: data.med.umn.edu Organization: University of Minnesota, Twin Cities X-Newsreader: TIN [version 1.2 PL2] References: <CrvA4s.4vr@cgl.ucsf.edu> Date: Tue, 28 Jun 1994 14:40:26 GMT Lines: 15