short-reads assemble and mapping

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Article #2302

#2302

From: zhuocheng Hou
Date: Wed, 22 Apr 2009 16:55

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Hi Everyone,

I am seeking for software which can assembl short-reads (<60bp) and also can
use draft genomic data to pileup data. As I know, MAQ, Velvet, ELAND etc
didn't use draft genome data. I guess we can get the better assembl results
by incoporating the short-reads and genomic data. Can anyone give me some
clues about these kinds of software?

Thanks,
Zhuocheng

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From: zhuocheng Hou <zchou@wayne.edu>
Newsgroups: bionet.software
Subject: short-reads assemble and mapping
Date: Wed, 22 Apr 2009 12:55:21 -0400
Organization: BIOSCI/IUBio, Biology Dept., Indiana University
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