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Article #2369Re: [Bio-software] blastall query
From: Victoria D Bohler
Date: Tue, 05 Jul 2011 12:04
Date: Tue, 05 Jul 2011 12:04
41 lines
3526 bytes
3526 bytes
Hello, In my opinion your database is not in blastable format. You have to use formatdb command: http://goo.gl/Vy114 I hope will be useful, Victoria Dominguez ABgenomica On Tue, Jul 5, 2011 at 11:08 AM, ishabioinfo <srivastavaisha.06@gmail.com>wrote: > hii > > i have downloaded the latest version of local blast ncbi- > blast-2.2.25+. > created .ncbirc file . > downloaded nr database. > when i m giving the command - > > blastall -p blastp -i mixo2.fasta -d nr -o fasta.out > > it is showing the error --- > > "Could not calculate ungapped Karlin-Altschul parameters due to an > invalid query sequence or its translation. Please verify the query > sequence(s) and/or filtering options" > > kindly help me to solve this problem > > thanku :) > > > _______________________________________________ > Bio-soft mailing list > Bio-soft@net.bio.net > http://www.bio.net/biomail/listinfo/bio-soft >
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