🚀 go-pugleaf

 Here is the most recent list of molecular biological software available from
 the EMBL File Server.
 Programs which have been added or updated since April are marked by an
 asterisk.

 To get information about the EMBL File Server and the software archives send a
 mail message to NETSERV@EMBL.BITNET containing the lines
 HELP
 HELP SOFTWARE


 Rainer Fuchs, Ph.D.
 EMBL Data Library
 fuchs@embl.bitnet


 DOS_SOFTWARE
 ------------

 filename             ALX3.UUE
 author               Gotoh O.
 description          Alignment of three protein or DNA sequences
 literatur            J. Theor. Biol. 121 (1986), 327-337

 filename             BIGMOUTH.UUE
 author               Jenson, H. B.
 description          Digitized sounds and utilities for TypeSeq and DigiSeq
 literatur            -

 filename             CIP.UUE
 author               Jenson, H. B.
 description          Calculation of reaction conditions for dephosphorylation
 literatur            -

 filename             CLONES.UAA
 author               Jenson, H. B.
 description          Management of clones, strains, libraries etc. databases
                      (Part 1 of 2)
 literatur            BioTechniques 7 (1989), 590-592

 filename             CLONES.UAB
 author               Jenson, H. B.
 description          Management of clones, strains, libraries etc. databases
                      (Part 2 of 2)
 literatur            BioTechniques 7 (1989), 590-592

 filename             CMOLECUL.UUE
 author               Thompson J. R. (Cedergren R.)
 description          graphics output of PCFOLD result files
 literatur            Nucl. Acids Res. 10 (1982), 8351-8356

 filename             DETAR.UUE
 author               VALVERDE J. R.
 description          Utility to extract .TAR files
 literatur            -

 filename             DIGISEQ.UUE
 author               Jenson, H. B.
 description          Sequence input using digitizer
 literatur            CABIOS 4 (1988), 218

 filename             DNACLONE.UAA
 author               Roy T. K.
 description          Management of clones, strains, libraries etc. databases
                      (Part 1 of 2)
 literatur            CABIOS 5 (1989), 321-322

 filename             DNACLONE.UAB
 author               Roy T. K.
 description          Management of clones, strains, libraries etc. databases
                      (Part 2 of 2)
 literatur            CABIOS 5 (1989), 321-322

 filename             ELBAMAP.UUE
 author               King G. J.
 description          Management of electrophoresis banding patterns
 literatur            CABIOS 5 (1989), 313-317

 filename             EMOLECUL.UUE
 author               Thompson J. R. (Cedergren R.)
 description          graphics output of PCFOLD result files
 literatur            Nucl. Acids Res. 10 (1982), 8351-8356

*filename             ESEE.UUE
 author               CABOT E.L.
 description          Multiple sequence editor
 literatur            CABIOS 5 (1989), 233-234

 filename             EZ-FIT.UUE
 author               Perella F. W.
 description          Calculation of enzyme and receptor kinetics
 literatur            Anal. Biochem. 174 (1989), 437-447

 filename             FAST.UUE
 author               Facchiano, A.
 description          Protein structure analysis
 literatur            CABIOS 5 (1989), 299-303

 filename             GEL.UUE
 author               Thompson J. R.
 description          Calculation of DNA restriction fragment sizes
 literatur            Anal. Biochem. 115 (81), 113-122

 filename             HMOLECUL.UUE
 author               Thompson J. R. (Cedergren R.)
 description          graphics output of PCFOLD result files
 literatur            Nucl. Acids Res. 10 (1982), 8351-8356

 filename             HYDRASC.UUE
 author               Penttila T. J.
 description          Contour map for two polypeptide sequences.
                      Regions with similar hydropathic properties and second.
                      structure properties are plotted.
 literatur            CABIOS, in prep.

 filename             LIGATE.UUE
 author               Jenson, H. B.
 description          Calculation of reaction conditions for ligation
 literatur            BioTechniques 5 (1987), 729-730

*filename             MELPROT.UUE
 author               Sikaris K.
 description          Secondary structure prediction and plotting
 literatur            CABIOS 5 (1989), 323

*filename             MELT.UUE
 author               Nash J.H.E.
 description          Melting point calculation of oligonucleotides
 literatur            -

 filename             MOLECSRC.UUE
 author               Thompson J. R. (Cedergren R.)
 description          Source code for *MOLECUL.UUE
 literatur            Nucl. Acids Res. 10 (1982), 8351-8356

 filename             MOTIF.UUE
 author               Giles I.
 description          Motif searching program
 literatur            CABIOS 5 (1989), 227-232

*filename             MULTALIN.UUE
 author               Corpet F.
 description          Multiple sequence alignment
 literatur            Nucl. Acids Res. 16 (1988), 10881-10890

 filename             OLIGO.UUE
 author               Beadles K.
 description          Oligo-directed single amino acid substitution
 literatur            -

 filename             PATTERN.UUE
 author               Giles I.
 description          Pattern searching program
 literatur            CABIOS 5 (1989), 227-232

 filename             PCFOLD.UUE
 author               Zuker M.
 description          RNA folding
 literatur            Meth. Enzymology 180 (1989), 262-288

 filename             PLASMID.UUE
 author               Lipsick J.
 description          Plasmid drawing program (CGA card req.)
 literatur            -

 filename             PREDICT.UUE
 author               Carmenes R. S.
 description          Protein secondary structure predictions
 literatur            Biochem. Biophy. Res. Commun. 15 (1989), 687-698

 filename             PRONET.UUE
 author               Pascarella S.
 description          Protein structure prediction with a neural network
 literatur            CABIOS 5 (1989), 319-320

 filename             SDSE.UAA
 author               Oliver J. L.
 description          Simulation of DNA sequence evolution (Part 1 of 2)
 literatur            CABIOS 5 (1989), 47-50

 filename             SDSE.UAB
 author               Oliver J. L.
 description          Simulation of DNA sequence evolution (Part 2 of 2)
 literatur            CABIOS 5 (1989), 47-50

 filename             SEQAID.UUE
 author               Roufa D.
 description          DNA and protein sequence analysis package
 literatur            -

 filename             SIGSEQ.UUE
 author               Popowicz A.M.
 description          Prediction of signal sequence cleavage site
 literatur            CABIOS 4 (1988), 405-406

*filename             SUBSIS.UUE
 author               Mandler J.
 description          Subdirectory handling with DNASIS(tm) or PROSIS(tm)
 literatur            CABIOS, in press

 filename             TDALIGN.UUE
 author               Davison D. (Thompson K.)
 description          Sequence alignment
 literatur            -

 filename             TYPESEQ.UUE
 author               Jenson, H. B.
 description          Sequence input using keyboard
 literatur            CABIOS 4 (1988), 218


 VAX_SOFTWARE
 ------------

*filename             AMPHI.UUE
 author               Jaehnig F.
 description          Prediction of membran protein structure
 literatur            Trends in Biochemistry 3 (1990)

 filename             BUGFIX_6_1.GCG
 author               -
 description          Fixes for several bugs in GCG package v6.1
 literatur            -

*filename             CD_ACCESS.UUE
 author               Stockwell P.A.
 description          Driver software for ISO-formatted CD-ROMs
 literatur            -

 filename             CLUSTAL.UUE
 author               Higgins D.
 description          Multiple sequence alignment
 literatur            Gene 73 (198), 237-244

*filename             FASTEMBL.COM
 author               Sonnhammer E. L. (Clark S.)
 description          DCL shell for facilitating EMBL Mail-FASTA access
 literatur            -

 filename             GCGDBASE.UUE
 author               Rice P.
 description          GCG extensions developed at EMBL for using new EMBL
                      distribution format
 literatur            -

*filename             GCGQUICK.UUE
 author               Rice P.
 description          GCG extensions developed at EMBL for speeding up
                      QuickSearch
 literatur            -

 filename             GCGEMBL.UAA
 ASCII conversion     UUE (split)
 author               Rice P.
 description          GCG extensions developed at EMBL (part 1 of 2)
 literatur            -

 filename             GCGEMBL.UAB
 author               Rice P.
 description          GCG extensions developed at EMBL (part 2 of 2)
 literatur            -

*filename             GCGSHELLS1.TXT
 author               Clark S.
 description          DCL shells for many GCG programs
 literatur            -

 filename             GCGSHELLS2.TXT
 author               Clark S.
 description          DCL shells to facilitate GenBank on-line service access
 literatur            -

 filename             MOTIF.UUE
 author               Giles I.
 description          Motif searching program
 literatur            CABIOS 5 (1989), 227-232

 filename             PATTERN.UUE
 author               Giles I.
 description          Pattern searching program
 literatur            CABIOS 5 (1989), 227-232

*filename             PROINDEX.UUE
 author               Clark S.
 description          Index file creation for ProSite pattern database
 literatur            -

*filename             PROSITEC.UUE
 author               Hofmann K.
 description          Conversion of Prosite database to Find format
 literatur            -

*filename             SCRUTINE.UAA
 author               Sibbald P.
 description          SCRUTINEER: a package for searching protein sequence
                      databases (part 1 of 4)
 literatur            CABIOS, in press

*filename             SCRUTINE.UAB
 author               Sibbald P.
 description          SCRUTINEER: a package for searching protein sequence
                      databases (part 2 of 4)
 literatur            CABIOS, in press

*filename             SCRUTINE.UAC
 author               Sibbald P.
 description          SCRUTINEER: a package for searching protein sequence
                      databases (part 3 of 4)
 literatur            CABIOS, in press

*filename             SCRUTINE.UAD
 author               Sibbald P.
 description          SCRUTINEER: a package for searching protein sequence
                      databases (part 4 of 4)
 literatur            CABIOS, in press

*filename             STATSRCH.UUE
 author               Mott R. F.
 description          Database searching taking into account the statistical
                      significance of any similarities found
 literatur            CABIOS, 5 (1989), 123-132

 filename             TREEALIG.UAA
 author               Hein J.
 description          Multiple sequence alignment and phylogeny (part 1 of 2)
 literatur            Meth. Enzymol. 183, p?

 filename             TREEALIG.UAB
 author               Hein J.
 description          Multiple sequence alignment and phylogeny (part 2 of 2)
 literatur            Meth. Enzymol. 183, p?


 MAC_SOFTWARE
 ------------

 filename             BUFSTACK.HQX
 author               Beynon R. J.
 description          Calculation of thermodynamically-corrected buffer recipes
 literatur            CABIOS 4 (1988), 487-490

 filename             DNAID.HQX
 author               Dardel F.
 description          DNA sequence editor with grep-like search routine
 literatur            CABIOS 4 (1988), 483-486

 filename             DOTTYPLOT.HQX
 author               Gilbert D.
 description          Dot-matrix comparison of DNA sequences
 literatur            CABIOS 6 (1990), 117

 filename             ENZYMEKIN.HQX
 author               Gilbert D.
 description          Calculation of enzyme kinetics
 literatur            CABIOS 6 (1990), 113-116

 filename             GELFRAG.HQX
 author               Gilbert D.
 description          Calculation of DNA restriction fragment sizes
 literatur            CABIOS 6 (1990), 113-116

 filename             MACDNA.HQX
 author               Schleif R.
 description          DNA sequence analysis, ported from IBM-PC
 literatur            -

 filename             MACPLASMAP.HQX
 author               Liu J.
 description          Plasmid drawing program. Very Mac-like!
 literatur            -

 filename             MACCLADE.HQX
 author               Maddison W and Maddison D
 description          Phylogeny program
 literatur            -

 filename             MATMETH.HQX
 author               Brown J.
 description          Molecular biological protocols
 literatur            -

 filename             MINIMM.HQX
 author               Brown J.
 description          Molecular biological protocols (more HyperCard-like)
 literatur            -

*filename             READSEQ.HQX
 author               Gilbert D.
 description          Pascal and C routines for handling different sequence
                      file formats (EMBL,IG,Strider etc.)
 literatur            -

 filename             REFSTACK.HQX
 author               Brown J.
 description          Management of literature references
 literatur            -

 filename             RRNA1.HQX
 author               Brown J.
 description          Phylogeny of 16/18S rRNA (part 1 of 2)
 literatur            -

 filename             RRNA2.HQX
 author               Brown J.
 description          Phylogeny of 16/18S rRNA (part 2 of 2)
 literatur            -

 filename             THREE.HQX
 author               Markiewicz P. (Johnson M.)
 description          Alignment of three protein sequences
 literatur            -