Article View: bionet.software
Article #24057Re: Software publishing
From: Kay Hofmann
Date: Wed, 14 Feb 1990 09:13
Date: Wed, 14 Feb 1990 09:13
42 lines
2844 bytes
2844 bytes
Hello !
I have the feeling that at the moment we do not have the problem
of 'software overload' although it may become increasingly important.
I like to have the possibility to obtain the majority of the published
molecular biology software from sources like netserv@embl or the iubio-
archive free of charge. In the past there were lots of algorithms published
and you had no chance of testing them on your own problems, because you
had to implement them for yourself (of course having no time for such
distractions).
I am willing to accept a certain quota of 'junk' on these servers, if
some conditions are met:
- The usage of the program and the algorithms involved should be
documented well enough to understand what the program is good for.
(This was a real trivial remark)
- It would be very nice if the authors would publish and distribute
the source code as well. This would give programmers the possibility to
improve the user-friendliness or to remove bugs, if they like to.
Most of all, is is important to add or change the sequence-formats
supported by the program. It is not a nice task to bring together
sequence-analysis software available only as executables, the one
of which only supports IG-format, the next one only EMBL-flat file, another
one only GenBank and so on.
Additionally the distribution of source code would allow porting the
program into other computer environments.
I am aware of the fact that some authors would not agree because of
copyright considerations and the fear of seeing there nice programs
degraded by some stupid programmer out there.
Bu if i have a look at the programs on distribution by the servers
which are available as executables only, i feel that most of them would
profit from modest modifications.
I think that most of the mol.Biol. Computer people being on the net
would agree, am i right ?
Kay Hofmann
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Kay Hofmann BITNET: AKC01@DK0RRZK1
Institut fuer Biochemie (med. Fakultaet) AKC01@DK0RRZK0
Universitaet Koeln
Joseph Stelzmann Str. 52
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fa6b6,6a0c71f60237d20a X-Google-Attributes: gidfa6b6,public X-Google-ArrivalTime: 1990-02-15 00:01:46 PST Path: arc1-ca.pugleaf.net!gmdzi!unido!mcsun!uunet!tut.cis.ohio-state.edu!mailrus!iuvax!bionet!dk0rrzk1.bitnet!AKC01 From: AKC01@dk0rrzk1.bitnet (Kay Hofmann) Newsgroups: bionet.software Subject: Re: Software publishing Message-ID: <9002140907.AA02472@net.bio.net> Date: 14 Feb 90 09:13:15 GMT References: <ODONNELL@ARCC.AFRC.AC.UK> Sender: daemon@genbank.BIO.NET Lines: 42 Posted: Wed Feb 14 10:13:15 1990