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Article #24072(none)
From: G_LENNON
Date: Wed, 14 Mar 1990 11:07
Date: Wed, 14 Mar 1990 11:07
17 lines
1245 bytes
1245 bytes
Dear Colleagues, Would anyone out there have a program capable of searching GenBank (or EMBL) looking for perfect matches to short (6-8 nucleotide long) sequences, but instead of searching the entire database, searching only those parts of the (human) sequence files that would be present in mRNA, ie. 5' untranslated regions, exons, and 3' untranslated regions. [Ideally, I would run one program that would answer the question, "Which sequenced gene(s) has at least one exact match to each of the following set of short sequences ?".] So far, I've not been able to locate a program capable of deciphering the feature tables well enough to make the mRNA sequence. Any ideas ?? With thanks in advance, Greg Lennon g_lennon@icrf.ac.uk
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fa6b6,2da45fa50e942435,start X-Google-Attributes: gidfa6b6,public X-Google-ArrivalTime: 1990-03-14 03:07:14 PST Path: arc1-ca.pugleaf.net!gmdzi!unido!mcsun!uunet!fernwood!decwrl!shelby!agate!bionet!icrf.ac.uk!G_LENNON From: G_LENNON@icrf.ac.uk Newsgroups: bionet.software Subject: (none) Message-ID: <9003141225.AA00470@genbank.bio.net> Date: 14 Mar 90 11:07:14 GMT Sender: daemon@genbank.BIO.NET Lines: 17 Posted: Wed Mar 14 12:07:14 1990