Article View: bionet.software
Article #2421RCDI/eRCDI web-server for codon usage deoptimization
From: ppuigbo
Date: Thu, 01 Apr 2010 14:35
Date: Thu, 01 Apr 2010 14:35
18 lines
3358 bytes
3358 bytes
The RCDI server is a web-application that calculates the Relative Codon Deoptimization Index (RCDI) and an expected value of the RCDI for a set of query sequences by generating random sequences with similar G+C content and amino acid composition to the input. The purpose of the server is to help in the analysis of host-virus phylogenetic relationships or to infer the potential host range of a virus and its replication strategy, as well as in experimental virology to ease the step of gene design for heterologous protein expression. RCDI/E-RCDI is and update of the server CAIcal ( http://genomes.urv.cat/CAIcal). This server is freely accessible at http://genomes.urv.cat/CAIcal/RCDI. For more details see Puigbo et al. (2010) BMC Reasearch Notes, 3:87.
Technical Details
Message-ID:
<mailman.379.1270139294.25217.bio-soft@net.bio.net>Path:
arc1-ca.pugleaf.net!g2news2.google.com!news2.google.com!Xl.tags.giganews.com!border1.nntp.dca.giganews.com!nntp.giganews.com!local2.nntp.dca.giganews.com!news.giganews.com.POSTED!not-for-mailShow Full Headers
Complete Article Headers
X-Google-Thread: fa6b6,5ccf894a20f08c32,start X-Google-NewGroupId: yes X-Google-Attributes: gid6710630482,domainid0,public,usenet X-Google-Language: ENGLISH,ASCII-7-bit Path: arc1-ca.pugleaf.net!g2news2.google.com!news2.google.com!Xl.tags.giganews.com!border1.nntp.dca.giganews.com!nntp.giganews.com!local2.nntp.dca.giganews.com!news.giganews.com.POSTED!not-for-mail NNTP-Posting-Date: Thu, 01 Apr 2010 11:28:43 -0500 X-Envelope-From: ppuigbo@gmail.com DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; h=domainkey-signature:mime-version:received:date:received:message-id :subject:from:to:content-type; bh=p7aFg4+rtOCjCVKGYSnz4Ec/dNj0ax2pOhyCO2xCO/E=; b=Y3z4Fcs8dXjEHaouN+nK45Kx1370Q3V6/TooqdmTI0M1bc3WH+T2WqfHUZx/4tU4vj fGdMn8HA60L7x6U6zb2QJGLnUXE3bHkYgvz+6bwptqxkKdg4TP8QfIsPdMELx5dx8g8x 7UZUwABpJUBgrj6I42sG219d/lKatSPL7VQtk= DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=gamma; h=mime-version:date:message-id:subject:from:to:content-type; b=p1Ddfy7xkKWnF1RaCKYa9utz2wWx7+RQF6Q83q99ZfrERFdA3t8JehRDQOC5uiZUK2 ARPsmwdDOypMVjhBuuHzFIO56Dycz2aH7A89G22Kk5IHon2w/VhZOZftNerXZE8CvIrs ZosdahUvoOOJ4cttPC6BXGRk3HMxSL8oR62xI= MIME-Version: 1.0 Date: Thu, 1 Apr 2010 10:35:07 -0400 From: ppuigbo@gmail.com To: bio-soft@magpie.bio.indiana.edu X-Mailman-Approved-At: Thu, 01 Apr 2010 11:28:11 -0500 Content-Type: text/plain; charset=ISO-8859-1 X-Content-Filtered-By: Mailman/MimeDel 2.1.4 X-BeenThere: bio-soft@net.bio.net X-Mailman-Version: 2.1.4 Precedence: list Organization: BIOSCI/IUBio, Biology Dept., Indiana University subject: RCDI/eRCDI web-server for codon usage deoptimization Newsgroups: bionet.software Message-ID: <mailman.379.1270139294.25217.bio-soft@net.bio.net> Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> X-Auth: PGPMoose V1.1 PGP bionet.software iQCVAwUBS7TJnqCIqsWvyF5FAQF6yAP/Rp3BW10jHaLMN3r0BxLpcDAbxVc1vt1r qjdqDcWNqHpOP+4deHouhwImr4vs9b+jFI+O4tBbeGlACp37k08ObY4lYln1cRne mwI73+ElyBJ038HMqL7jZT7hAKZCVgcz9L/+rwltk8CQDdV6lN2Jf+mrXYshvVfv kKDNE15zdkM= =15dx Lines: 18 X-Usenet-Provider: http://www.giganews.com X-Trace: sv3-m1N8UecyM7TzBTvCHCea9W36ia8dNJWic2R8AVzLyqnk4V+JZiq6d/0h/+anmMZ0TWkkeIxQ2SAt74h!JlZSTDuOGKHb8G/BhaGe4IClIWFXw3TS43MTSwSjfX1HjgehPi12ozJS3DwhO7sSAPF88GBjBOFi!AIuP X-Complaints-To: abuse@giganews.com X-DMCA-Notifications: http://www.giganews.com/info/dmca.html X-Abuse-and-DMCA-Info: Please be sure to forward a copy of ALL headers X-Abuse-and-DMCA-Info: Otherwise we will be unable to process your complaint properly X-Postfilter: 1.3.40