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Article #2500[Bio-software] Please recommend good ontology analysis tools
From: RY Bao
Date: Fri, 30 Jul 2010 00:29
Date: Fri, 30 Jul 2010 00:29
15 lines
3639 bytes
3639 bytes
Hello Everybody,
I have a list of about 6000 genes, with around 800 of them associated with gene
family expansion. I want to detect GO over/under-representation in this dataset.
I have tried GOstat (FDR Benjamini), GOToolBox (Hypergeometric, Benjamini &
Hochberg), and Ontologizer (Parent-Child-Union, Benjamini-Hochberg). However,
they gave me very different results. Could anybody give me some suggestions
about which program to use, or which model gives better results? Are there any
other recommended programs that I can use? Thank you so much! :-)
Greetings,
Sunny Bao (Wayne State University, US)
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