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Article #2532error in run blastpgp
From: hamze rahimi
Date: Tue, 04 Jan 2011 11:38
Date: Tue, 04 Jan 2011 11:38
41 lines
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3834 bytes
Dear expert I download blast-2.2.18-ia32-linux.tar.gz and unzipped. when I want run under command, I find this error [buksanbio@localhost bin]$ ./blastpgp -v 5000 -b 0 -j 3 -h 0.002 -d /home/buksanbio/nr/ -i 535.fasta -C.Chk > /dev/null [blastpgp] WARNING: Unable to open .pin or [buksanbio@localhost bin]$ ./blastpgp -v 5000 -b 0 -j 3 -h 0.002 -d ~/nr/* -i 535.fasta -C.Chk > /dev/null [blastpgp] ERROR: Arguments must start with '-' (the offending argument #11 was: '/home/buksanbio/nrfilt/nr.00.pin') as recommanded in doc file I convert database by this command: ./formatdb -i ~/.../nr -p T -o T nr is my database that contain these files: nr.00.phr nr.00.psd nr.01.pin nr.01.psi nr.02.pnd nr.02.psq nr.03.pni nr.04.phr nr.04.psd nr.00.pin nr.00.psi nr.01.pnd nr.01.psq nr.02.pni nr.03.phr nr.03.psd nr.04.pin nr.04.psi nr.00.pnd nr.00.psq nr.01.pni nr.02.phr nr.02.psd nr.03.pin nr.03.psi nr.04.pnd nr.04.psq nr.00.pni nr.01.phr nr.01.psd nr.02.pin nr.02.psi nr.03.pnd nr.03.psq nr.04.pni nr.pal what is problem? thanks a lot for any help -- Yours sincerely Rahimi Hamzeh PhD student in Medical Biotechnology Pasteur institute e mail: buksanbio@gmail.com
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