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Article #2566Re: [Bio-software] SNP Analysis : Parser for Polybayes result
From: lparsons
Date: Fri, 31 Oct 2008 21:17
Date: Fri, 31 Oct 2008 21:17
69 lines
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4157 bytes
Hello I am the author of that web page, which is no longer up because the lab itself no longer exists. There should have been a redirect link back in 2006 when you wrote that message, however the redirect link itself would no longer work at this point. I have attached the perl script that was mentioned in the link, feel free to use it however you like. I apologize for not getting this to you sooner, hopefully someone can make use of this old script. http://www.nabble.com/file/p20274161/SNP_analysis.pl SNP_analysis.pl i.j.nijman wrote: > > forgotten link: http://www.ccgb.umn.edu/~lparsons/downloads/index.html > i.j.nijman@gmail.com wrote: >> Hi, >> >> Have you seen this page? There's a simple script which parses the >> polybayes output. >> >> Cheers, >> Ies Nijman >> >> Elango, Palchamy (ICRISAT-IN) wrote: >> > I am using Polybayes program [Author: Prof. Gabor T. Marth] for SNP >> analysis. >> > >> > I wish to parse and extract SNP associated information from the output >> (textual mulitple sequence alignment) of Polybayes program. >> > >> > Alternatively I am trying out the possibilities of converting the >> polybayes alignment output into any standard multiple alignment format, >> so that I can able to use other SNP analysis programs that read multiple >> sequence alignment files as input. >> > >> > I wish to use your parser script or any bioperl / biojava module. >> > Does anyone know or use any bioperl /biopython /biojava module ? >> > I shall be grateful if you could kindly provide me some tips or >> additional information on this. >> > >> > Thanking you >> > Elango >> > P.Elango >> > >> > GT-Biotechnology, >> > International Crops Research Institute for the Semi-Arid Tropics >> (ICRISAT), >> > Patancheru - 502 324, Andhra Pradesh, India. >> > Work: +(91) 40 307 13321 , Home: +(91) 40 559 98770 / +(91) 98854 >> 98770 (Mobile) >> > pelango@cgiar.org <mailto:pelango@cgiar.org> www.cgiar.org >> <http://www.cgiar.org> elango@palchamy.com <mailto:elango@palchamy.com> > > _______________________________________________ > Bio-soft mailing list > Bio-soft@net.bio.net > http://www.bio.net/biomail/listinfo/bio-soft > > -- View this message in context: http://www.nabble.com/Re%3A-SNP-Analysis-%3A-Parser-for-Polybayes-result-tp4958969p20274161.html Sent from the Bio.net - Bio-soft mailing list archive at Nabble.com.
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X-Google-Thread: fa6b6,443dd80eba5fdefe,start X-Google-Attributes: gidfa6b6,domainid0,public,usenet X-Google-Language: ENGLISH,ASCII-7-bit Path: arc1-ca.pugleaf.net!g2news2.google.com!news2.google.com!news.glorb.com!news.cse.ohio-state.edu!usenet01.sei.cmu.edu!elk.ncren.net!news.purdue.edu!not-for-mail From: lparsons <parsonsl@upstate.edu> Newsgroups: bionet.software Subject: Re: [Bio-software] SNP Analysis : Parser for Polybayes result Date: Fri, 31 Oct 2008 14:17:10 -0700 (PDT) Organization: BIOSCI/IUBio, Biology Dept., Indiana University Lines: 70 Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <mailman.570.1225489793.29717.bio-soft@net.bio.net> References: <1150813517.075792.171120@b68g2000cwa.googlegroups.com> <1150882311.332561.220910@m73g2000cwd.googlegroups.com> NNTP-Posting-Host: kalo.bio.indiana.edu Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit X-Trace: mailhub227.itcs.purdue.edu 1225489825 22800 129.79.224.26 (31 Oct 2008 21:50:25 GMT) X-Complaints-To: news@purdue.edu NNTP-Posting-Date: Fri, 31 Oct 2008 21:50:25 +0000 (UTC) To: bio-soft@magpie.bio.indiana.edu X-Envelope-From: bounces@nabble.com In-Reply-To: <1150882311.332561.220910@m73g2000cwd.googlegroups.com> X-Nabble-From: parsonsl@upstate.edu X-Mailman-Approved-At: Fri, 31 Oct 2008 16:49:52 -0500 X-BeenThere: bio-soft@net.bio.net X-Mailman-Version: 2.1.4 Precedence: list X-Auth: PGPMoose V1.1 PGP bionet.software iQCVAwUBSQt9gqCIqsWvyF5FAQGQvQP9E9MejsPPzxf4atpPjtO9NHPA2n+szlYZ 0n/dBk2/3rX44RUzcDmYp5DEw3YN9qF60ksUs4f6p37Fy9e7OfSFB+fDhMWbAg3k jqPs7qybudmHJ+3V/eMYkXoK7bOjAAkSweNebSElHR04d61NAoHmPO/UWSz3l3Ee /TlFDjsW3mA= =bMjf