Re: Free software for motif finding

Article View: bionet.software

Article #2611

#2611

From: darked
Date: Tue, 05 Feb 2008 20:39

19 lines
2458 bytes

On Jan 29, 5:15 am, "Aneesh Krishna" <krishna.ane...@gmail.com> wrote:
> Dear All,
>
> Please tell me some free software for finding motifs from a set of sequences
> (both nucleotide and protein). And I want to run it in windows and command
> line also.
> With Regards-
> Aneesh.K
> krishna.ane...@gmail.com
> Mob: 09999061058

If you have problems with AlignACE try following this tutorial, first
with test sequences then with a set of your own:
http://arep.med.harvard.edu/labgc/amcguire/IBSS/alignace_exercise.html

MEME/NestedMICA shall be more user friendly IMHO.

Darek Kedra
http://openwetware.org/wiki/Wikiomics

Technical Details

Message-ID: <mailman.502.1202247825.2451.bio-soft@net.bio.net>

Path:

arc1-ca.pugleaf.net!g2news1.google.com!news2.google.com!news.glorb.com!news.aset.psu.edu!news.cse.psu.edu!elk.ncren.net!news.purdue.edu!s12g2000prg.googlegroups.com!not-for-mail

References: <mailman.399.1201585695.2451.bio-soft@net.bio.net>

Show Full Headers

Complete Article Headers

X-Google-Thread: fa6b6,27e146ab161dce84
X-Google-Attributes: gidfa6b6,public,usenet
X-Google-Language: ENGLISH,ASCII-7-bit
Path: arc1-ca.pugleaf.net!g2news1.google.com!news2.google.com!news.glorb.com!news.aset.psu.edu!news.cse.psu.edu!elk.ncren.net!news.purdue.edu!s12g2000prg.googlegroups.com!not-for-mail
From: darked <darek.kedra@gmail.com>
Newsgroups: bionet.software
Subject: Re: Free software for motif finding
Date: Tue, 5 Feb 2008 12:39:46 -0800 (PST)
Organization: http://groups.google.com
Lines: 20
Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net>
Message-ID: <mailman.502.1202247825.2451.bio-soft@net.bio.net>
References: <mailman.399.1201585695.2451.bio-soft@net.bio.net>
NNTP-Posting-Host: kalo.bio.indiana.edu
Mime-Version: 1.0
Content-Type: text/plain; charset=ISO-8859-1
Content-Transfer-Encoding: 7bit
X-Trace: mailhub227.itcs.purdue.edu 1202247851 9439 129.79.224.26 (5 Feb 2008 21:44:11 GMT)
X-Complaints-To: news@purdue.edu
NNTP-Posting-Date: Tue, 5 Feb 2008 21:44:11 +0000 (UTC)
To: bionet-software@moderators.isc.org
X-Envelope-From: news@google.com
Complaints-To: groups-abuse@google.com
Injection-Info: s12g2000prg.googlegroups.com; posting-host=155.198.233.119; 
 posting-account=qfPWjQkAAAA6hERiY88HenwmS1bYZo7_
User-Agent: G2/1.0
X-HTTP-UserAgent: Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.8.1.11) 
 Gecko/20080126 Firefox/2.0.0.11 Flock/1.0.8,gzip(gfe),gzip(gfe)
X-Mailman-Approved-At: Tue, 05 Feb 2008 16:43:18 -0500
X-BeenThere: bio-soft@net.bio.net
X-Mailman-Version: 2.1.4
Precedence: list
X-Auth: PGPMoose V1.1 PGP bionet.software
 iQCVAwUBR6jYkqCIqsWvyF5FAQGHowP/S6lfa9/Y7EeOH7/S7Fsg0ef+8adJjN7B
 6u3vWNiwY+gBO44uCwTQVtEWF1GE2LNYgf+JaoomEYj7SqpevzxKrp5XYI1JkKZc
 hllOvvjbQ9IFDoko4BwZzNVmkdktoqH25YXBcjplXrrUkOXUWqG4/w0tlD+NmNVV
 Djlay4ClpG8= =JbYF

Reply to Parent Message