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Article #2613PhyloSort - a phylogenetic sorting tool
From: Ahmed Moustafa
Date: Wed, 06 Feb 2008 22:17
Date: Wed, 06 Feb 2008 22:17
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2485 bytes
PhyloSort (http://phylosort.sourceforge.net) is an open-source user- friendly Java tool to sort phylogenetic trees by searching for subtrees that contain a monophyletic group of interest defined by operational taxonomic units. Version 1.3 has been released and it is freely available as source code and binaries (Windows, Mac and UNIX). The manuscript that describes the implementation of PhyloSort and its application to estimate the contribution of cyanobacteria to the nuclear genome of photosynthetic eukaryotes endosymbiotic gene transfer has been published at BMC Evolutionary Biology (http:// www.biomedcentral.com/1471-2148/8/6). --ahmed
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X-Google-Thread: fa6b6,a0d00c79896356be,start X-Google-Attributes: gidfa6b6,public,usenet X-Google-Language: ENGLISH,ASCII-7-bit Path: arc1-ca.pugleaf.net!g2news1.google.com!news1.google.com!news.glorb.com!news.aset.psu.edu!news.cse.psu.edu!elk.ncren.net!news.purdue.edu!e10g2000prf.googlegroups.com!not-for-mail From: Ahmed Moustafa <ahmed@users.sourceforge.net> Newsgroups: bionet.software Subject: PhyloSort - a phylogenetic sorting tool Followup-To: bionet.software Date: Wed, 6 Feb 2008 14:17:35 -0800 (PST) Organization: http://groups.google.com Lines: 16 Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <mailman.527.1202336876.2451.bio-soft@net.bio.net> NNTP-Posting-Host: kalo.bio.indiana.edu Mime-Version: 1.0 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit X-Trace: mailhub227.itcs.purdue.edu 1202336917 28736 129.79.224.26 (6 Feb 2008 22:28:37 GMT) X-Complaints-To: news@purdue.edu NNTP-Posting-Date: Wed, 6 Feb 2008 22:28:37 +0000 (UTC) To: bionet-software@moderators.isc.org X-Envelope-From: news@google.com Complaints-To: groups-abuse@google.com Injection-Info: e10g2000prf.googlegroups.com; posting-host=71.213.202.208; posting-account=ASMoFwoAAADBMQN7o4ZGFq25KaJJW1uk User-Agent: G2/1.0 X-HTTP-UserAgent: Mozilla/5.0 (Windows; U; Windows NT 6.0; en-US; rv:1.8.1.11) Gecko/20080126 Firefox/2.0.0.11 Flock/1.0.8, gzip(gfe), gzip(gfe) X-Mailman-Approved-At: Wed, 06 Feb 2008 17:27:55 -0500 X-BeenThere: bio-soft@net.bio.net X-Mailman-Version: 2.1.4 Precedence: list X-Auth: PGPMoose V1.1 PGP bionet.software iQCVAwUBR6o0bKCIqsWvyF5FAQFH+QP8DdiTuVovHabYBbYBglLht8Q2mNlqvnrt mDWY26Etjb36O60EvYBthy+l4Jwtj4XTGqCaty7AdezJgUBJqt7Mju0Tm5wj5zs9 aAB5yk5XuxDGQZlcnzCO3tAst0lP3PYsAK689OtCBNV6YpGefj8fQKlGAsG1aQQA MEIxaNonazA= =Qq7b