New NMR secondary structure assignment software

Thread View: bionet.structural-nmr

1 messages

[T] Back to Threads [V] Tree View [G] Group Articles

1 total messages Started by Ling-Hong Hung Tue, 16 Jul 2002 20:35

#153

Author: Ling-Hong Hung
Date: Tue, 16 Jul 2002 20:35

15 lines
1845 bytes

We'd like to announce some new software for assigning secondary
structure which is now available from our webserver.

PsiCSI: Secondary structure from sequence and chemical shifts

PsiCSI uses neural networks to translate chemical shifts to secondary
structure information and combine it with sequence based prediction
algorithms (PsiPred). For a rigorously jack-knifed set of 92 proteins,
PsiCSI made 36% fewer errors than CSI, achieving a sustained 3-state
accuracy of 89%.  In addition, because of the sequence based component,
the method remains effective with sparse and incomplete chemical shift
data. A webserver is available at
<http://protinfo.compbio.washington.edu/> 

Hong Hung (lhhung at compbio.washington.edu)

Thread Navigation

This is a paginated view of messages in the thread with full content displayed inline.

Messages are displayed in chronological order, with the original post highlighted in green.

Use pagination controls to navigate through all messages in large threads.

Back to All Threads