[bionet.software] Reading and translating sequence formats

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Article #6133

#6133

From: Don Gilbert
Date: Mon, 26 Feb 1990 21:42

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Archive-name: readseq/26-Feb-90
Original-posting-by: GilbertD@IUBio.Bio.Indiana.Edu (Don Gilbert)
Original-subject: Reading and translating sequence formats
Archive-site: iubio.bio.indiana.edu [129.79.1.101]
Archive-directory: [archive.molbio.readseq]
Reposted-by: emv@math.lsa.umich.edu (Edward Vielmetti)

ReadSeq is a set of program source code routines that will read nucleic 
acid and protein sequences stored in the following formats: 
   Stanford/IG, Genbank, NBRF, EMBL, GCG, DNAStrider, Fitch, Pearson, 
   and Zuker.
As well, it will convert a file to a new format.  Data files may have 
multiple sequences.

The program is available in C and Pascal flavors.  The C version includes 
command line and batch processing of files, and is written in ANSI C, and 
works with many micro and macro computers.  The pascal version is UCSD 
style.  This source code, copyrighted by me, may be freely copied and used 
by anyone.  Developers are encourged to incorporate parts in their 
programs, rather than devise their own private sequence format.

You can get ReadSeq from the anonymous ftp archive at IuBio (ftp 
iubio.bio.indiana.edu, user anonymous), in the directory 
[archive.molbio.readseq].
        -- Don 

Don Gilbert  biocomputing office  / archive for
gilbertd@iubio.bio.indiana.edu   / molecular & general biology
biology dept., indiana univ.,   / ftp iubio.bio.indiana.edu
bloomington, in 47405, usa     / (129.79.1.101) user anonymous

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From: GilbertD@IUBio.Bio.Indiana.Edu (Don Gilbert)
Newsgroups: comp.archives
Subject: [bionet.software] Reading and translating sequence formats
Message-ID: <11173@stag.math.lsa.umich.edu>
Date: 26 Feb 90 21:42:26 GMT
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Approved: emv@math.lsa.umich.edu (Edward Vielmetti)