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Article #619[bionet.software] mailfasta 3.0
From: Thon de Boer
Date: Sat, 05 Sep 1992 19:18
Date: Sat, 05 Sep 1992 19:18
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Archive-name: auto/bionet.software/mailfasta-3-0 Version 3.0 of the mailfasta program is available via anonymous FTP from fly.bio.indiana.edu::/incoming/mailfasta3.0 Mailfasta 3.0 is a UNIX shell script which will take a DNA or PROTEIN sequence and will mail it to all the different mail-servers where it can be searched against the DNA or PROTEIN databases using the FASTA and/or BLAST programs. It can also be used to identify ORFs using the GRAIL and/or GeneID/NetGene mail servers and to identify homology using PROSITE blocks with the BLOCKS server. It uses the new BLAST server at NCBI and the FLAT server in Japan for FASTA searches because the services at GenBank will be terminated at the end of this month. It is packed as an shell archive. It contains : mailfasta : the UNIX shell script cid.c : A small c program which will determine if the sequence is DNA or AA getentry : A shell script which can be used to retrieve entries of interest mailfasta.doc : The documentation file The shar file will unpack all these files and will compile cid.c into cid using the cc c compiler. mailfasta makes use oif the program 'readseq' for file conversion. This program MUST be present and is NOT packed with this shar file. It can be obtained via FTP from various FTP sites (fly.bio.indiana.edu etc.) This shar file can also be found on this FTP site. First in the 'incomming' directory and later in the /molbio/unix directory. Thon de Boer
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Path: arc1-ca.pugleaf.net!sparky!uunet!spool.mu.edu!agate!agate!usenet From: deboer@bio.vu.nl (Thon de Boer) Newsgroups: comp.archives Subject: [bionet.software] mailfasta 3.0 Followup-To: bionet.software Date: 5 Sep 1992 19:18:21 GMT Organization: VU Biology, Amsterdam, The Netherlands Lines: 32 Approved: adam@soda.berkeley.edu Distribution: world Message-ID: <18b15tINNhvv@agate.berkeley.edu> References: <1992Sep5.164908.28249@bio.vu.nl> NNTP-Posting-Host: soda.berkeley.edu X-Original-Newsgroups: bionet.software X-Original-Date: Sat, 5 Sep 1992 16:49:08 GMT