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Started by Matteo diTommaso
Fri, 07 Jun 1996 00:00
Naming EMBL Daily Updates & NIs
Author: Matteo diTommaso
Date: Fri, 07 Jun 1996 00:00
Date: Fri, 07 Jun 1996 00:00
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2404 bytes
Daily Updates ------------- The following naming convention will be used at the EBI for the naming of daily update files to the EMBL Nucleotide database. Each release is given a number. The June release of the EMBL database will be Release 47. The next update to appear will be the first one to apply to release 47. All updates to this release will be sequentially numbered. r47u001.dat.Z r47u002.dat.Z r47u003.dat.Z This change from the date based numbering scheme allows us to issue more than one update per day. This will allow us, if necessary, to keep the size of updates below a given maximum and makes it easy for users to determine whether or not any updates have been missed. NIDs ------ The first entries containing NI numnbers will begin to appear this evening. The NI line shows the Nucleotide Sequence ID number this number is associated with the exact sequence in the entry and only changes when the sequence changes. This sequence number is essential for the building of secondary sequences (e.g a chromosome sequence which is constructed by concatenating parts several existing sequences). Using the NI numbers it is possible to point to the version of the sequence being used in the construction. The process of adding NI numbers to the EMBL database included a full comparison of all sequences in GenBank and EMBL databases to ensure that the sequences in both databases are the same. Matteo diTommaso -------------------------------------------------------- E-mail: ditommaso@ebi.ac.uk WWW: http://jupiter.ebi.ac.uk/~tommaso/ EMBL Outstation - European Bioinformatics Institute Hinxton Hall, Hinxton, Cambs, CB10 1RQ United Kingdom --------------------------------------------------------
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