Thread View: fj.sci.bio
3 messages
3 total messages
Started by Katsuyuki Yamato
Fri, 30 Oct 1992 01:20
How to extract a partial sequence from database?
Author: Katsuyuki Yamato
Date: Fri, 30 Oct 1992 01:20
Date: Fri, 30 Oct 1992 01:20
11 lines
1244 bytes
1244 bytes
$@BgOB!w5~Bg%_%H%3%s%I%j20$G$9!#$$$D$bFI$`$@$1(J$@!??R$M$k$@$1$G$9!"!"!"(J
$@#G#e#n#B#a#n#k$J$I$N%G!<%?%Y!<%9$+$i%(%s%H%j!<$r$R$$$F$-$F!"$=$NCf$N0l(J
$@It$N%7(J$@!<%1%s%9!"Nc$($P(J FEATURE TABLE $@$K5-=R$5$l$F$$$kNN0h$N0l$D!J%$%s(J
$@%H%m%sM-$j!?L5$7!K!"$"$k$$$O2?1v4pL\$+(J$@$i2?1v4pL\$^$G!"$rB>$N%"%W%j%1!<(J
$@%7%g%s$K$h$k2r@O$K;H$($k$h$&$J%U%)!<%^%C%H$GCj=P$7$F$/$l$kJXMx$J%=%U(J$@%H(J
$@$O$J$$$G$7$g$&$+!)<+J,$G$O$=$s$J%W%m%0%i%`$rAH$a$=$&$K$b$J$$$G$9$7!"!"!"(J
$@0dEA8&$K$O$J$$$h$&$G$9$N$G(J$@!"$h$m$7$/$*4j$$CW$7$^$9!#(J
$@5~ETBg3XG@3XItG@7]2=3X65<<?"J*J,;R@8J*3X8&5f<<(J $@#D#3(J
$@Bg(J$@OB(J $@>!9,(J e53905@sakura.kudpc.kyoto-u.ac.jp
Re: How to extract a partial sequence from database?
Author: Fumio Ike
Date: Fri, 30 Oct 1992 04:30
Date: Fri, 30 Oct 1992 04:30
18 lines
1504 bytes
1504 bytes
$BCS!wM}8&$G$9!#(B
In article <E53905.92Oct30102015@sakura.sakura.kudpc.kyoto-u.ac.jp> e53905@sakura.kudpc.kyoto-u.ac.jp (Katsuyuki Yamato) writes:
>$B#G#e#n#B#a#n#k$J$I$N%G!<%?%Y!<%9$+$i%(%s%H%j!<$r$R$$$F$-$F!"$=$NCf$N0l(B
>$BIt$N%7!<%1%s%9!"Nc$($P(B FEATURE TABLE $B$K5-=R$5$l$F$$$kNN0h$N0l$D!J%$%s(B
>$B%H%m%sM-$j!?L5$7!K!"$"$k$$$O2?1v4pL\$+$i2?1v4pL\$^$G!"$rB>$N%"%W%j%1!<(B
>$B%7%g%s$K$h$k2r@O$K;H$($k$h$&$J%U%)!<%^%C%H$GCj=P$7$F$/$l$kJXMx$J%=%U%H(B
>$B$O$J$$$G$7$g$&$+!)<+J,$G$O$=$s$J%W%m%0%i%`$rAH$a$=$&$K$b$J$$$G$9$7!"!"!"(B
>$B0dEA8&$K$O$J$$$h$&$G$9$N$G!"$h$m$7$/$*4j$$CW$7$^$9!#(B
$B#U#W#G#C#G$N(B assemble $B%3%^%s%I$G$OBLL\$G$9$+!)(B
$B%G!<%?%Y!<%9$N%U%)!<%^%C%H$r0];}$7$?$^$^G$0U$N1v4pG[Ns!J#XHVL\$+$i#YHVL\!K(B
$B$r@Z$j<h$C$?$j!"$5$i$KB>$NG[Ns$H$D$J$$$@$j$G$-$^$9$,!#(B
$B!!!!!!!!!!!!!!!!!!CS!!0j@8!wM}2=3X8&5f=j!!F0J*!&:YK&%7%9%F%`8&5f<<(B
fike@rkna50.riken.go.jp
TEL:048-462-1111(ext5042), FAX:048-462-4681(direct)
Re: How to extract a partial sequence from database?
Author: Tanaka Hidetosi
Date: Fri, 30 Oct 1992 08:09
Date: Fri, 30 Oct 1992 08:09
57 lines
3521 bytes
3521 bytes
In article <E53905.92Oct30102015@sakura.sakura.kudpc.kyoto-u.ac.jp>
e53905@sakura.kudpc.kyoto-u.ac.jp (Katsuyuki Yamato) writes:
|$B#G#e#n#B#a#n#k$J$I$N%G!<%?%Y!<%9$+$i%(%s%H%j!<$r$R$$(B$B$F$-$F!"(B
|$B$=$NCf$N0lIt$N%7!<%1%s%9$rB>$N%"%W%j%1!<%7%g%s$K$h$k2r@O$K(B
|$B;H$($k$h$&$J%U%)!<%^%C%H$GCj=P(B$B$7$F$/$l$kJXMx$J%=%U%H$O(B
|$B$J$$$G$7$g$&$+!)(B
$B$"$H$O!"(BEntrez (NIH $B$N(BCDROM) $B$+(B GeneWorks (IntelliGenetics$B!"9b2A!*(B)
$B$"$?$j$GBLL\$J$i!"$J$$$+$b!#(B $B0J2<$OC1$J$k4XO"%3%a%s%H$G$9(B(_ _)
(1)
| $BNc$($P(B FEATURE TABLE $B$K5-=R$5$l$F$$$kNN0h$N0l$D!J%$%s%H%m%sM-$j!?L5$7!K!"(B
$B$3$l$O$A$g$C$HLLE]!#(BGenBank$B$NHO0O;XDj$O!"(B
join(1..123, 135..200, 250..300)
(=$BG[Ns$N(B1$B$+$i(B123, 135$B$+$i(B200, 250$B$+$i(B300$BHVL\$r<h$C$F$-$F$/$C$D$1$k(B)
$B0lHL$K$O$3$s$JIw$G!"$3$NDxEY$J$iItJ,J8;zNs$r$H$k$@$1$@$+$iC/$G$b(B
$B=q$1$=$&$G$9$,!"$3$l$K:F5"E*$K(B complement ($BJd:?B&(B) $B$@$N(B
one-of ($B0J2<$NFb$N$I$l$+(B) $B$@$N$,$+$i$^$k$3$H$b$"$k$o$1$G!D!#(B
$B0J2<$O(B GenBank $B$NCf(B$B$G$bLLE]$JNc!JH4?h!K!#(B
$BC1$K$/$C$D$1$k$@$1$@$1$IB>$N%(%s%H%j$r;2>H$7$F$k$N$,LLE]!#(B
CDS join(M68998:1341..1385,M68999:39..108,M81617:1..20,
M81618:1..21,M68974:363..413,M68975:200..235,
M68976:24..50,M68977:80..106,M68978:183..209,
M68979:30..56,M68988:11..37,M68989:356..412,M68980:6..71,
M68990:11..118,M68981:61..87,M68982:12..47,M68983:26..70,
M68984:92..124,M68985:11..37,M68986:59..112,
M68987:23..109,M68991:11..64,M68992:1..45,M68993:11..79,
M68994:11..34,M68995:11..73,M68996:1..42,M68997:11..163,
M69000:149..193,M69010:16..57,M69007:16..42,M69006:16..96,
M69005:186..221,M69004:16..69,M69003:1..54,M69002:16..51,
M69001:16..102,M69009:16..54,16..18)
/note="This is not a complete cds. Exons 3 and 4 were
missing from the submitted data therefore GenBank had to
get the incomplete exons from the published citation (Fig.
2)."
/product="alpha-1 type XIII collagen"
$B$=$&$J(B$B$s$G$9!"$*$^$1$K!"8+$k$+$i$K%Q!<%6=q$-$K$/$$3J9%$G$7$g!)(B(^_^;)
$B%G!<%?%Y!<%9E*$K$b!"B0@-!]B0@-CM%Z%"$,(B$BB0@-CM$NCf$K=q$$$F$"$C$F!"(B
$BHs@55,4X78$@$H$^$!$J$s$H$+$J$k$1$I!"4X78(BDB$B$@$HLe@d$9$k$H$$$&!D(B(^^;)
$B!J$G$b(B$B$3$lBg85$O(BSyBase$B$KF~$C$F$k$O$:$J$s$@$h$J!#!K(B
(2)
| $B$"$k$$$O2?1v4pL\$+$i2?1v4pL\$^$G!"(B
$B$3$l$@$1$J$i(B$B4JC1!#;d$b2?EY$+=q$$$?!#(BICOT $BFH<+$J(B DBMS $B$N5!G=$K0MB8$9$k(B
$BItJ,$,BgH>$G!";DG0$J$,$i$*Lr$KN)$F$=$&$b$J$$(B$B$G$9$,(B(_ _)
====== $BEDCf=(=S!w#I#C#O#T(B
$B!!!!!!!!(Bhtanaka@icot.or.jp
$B!!!!!!!!(BGBA01223 (NIFTY) ======
Thread Navigation
This is a paginated view of messages in the thread with full content displayed inline.
Messages are displayed in chronological order, with the original post highlighted in green.
Use pagination controls to navigate through all messages in large threads.
Back to All Threads