🚀 go-pugleaf

Path: niguts!nfujita
Date: 31 Oct 92 16:54:20 GMT
Message-ID: <nfujita.720550460@niguts>
Newsgroups: fj.sci.bio
Subject: Re: How to extract a partial sequence from database?
Distribution: fj
References: <E53905.92Oct30102015@sakura.sakura.kudpc.kyoto-u.ac.jp>

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e53905@sakura.kudpc.kyoto-u.ac.jp (Katsuyuki Yamato) writes:
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$B$@$H(J flat $B$NCf$K(J seqext $B$H$$$&$N$,$"$C$F!"(Jfeature table $B$N5-=R$K=>(J
$B$C$FG[Ns$rCj=P$7$F$/$l$F$$$?$N$G$9$,!"(J $B8=:_$N(J  GenBank  $B$N(J feature
table $B$K$O;DG0$J$,$iBP1~$7$F$$$J$$$h$&$G$9!#$=$NBe$o$j$H$$$C$F$O$J(J
$B$s$G$9$,!"H>F|$+$1$F(J subseq $B$J$k%3%^%s%I$r$G$C$A$"$2$F$_$^$7$?!#2J(J
$B8&Hq?=@A=q=q$-$+$i$NF(Hr9TF0$G$9!J(J^^;$B!K!#(J

   subseq [-s start_number] [-t end_number] [-c] [-a|-A] [input_file] 
      -s number  specify start position of subsequence
                  (default=1)
      -t number  specify end position of subsequence
                  (default=last residue of input sequence)
      -c         subsequence will be reverse-complemented
      -a         subsequence (or its reverse-complementary
                  sequence) will be translated into amino
                  acid sequence using universal codon table
      -A         same as -a except that translation will be
                  terminated when the first stop codon is
                  encountered

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$B$K$N$C$F$$$k(J gawk $B$r;H$C$?>l9g$NOC$G!"(Jawk $B$N<oN`$d%P!<%8%g%s$K$h$C(J
$B$F$3$NCM$OJQ$o$C$F$/$k$+$b$7$l$^$;$s!#(J

DDBJ $B$N(J anonymous FTP (ftp.nig.ac.jp) $B$KEPO?$7$F$*$-$^$7$?$N$G!"<Q(J
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$B$F$^$;$s!J(J^^;$B!K!#46A[$r$*J9$+$;$/$@$5$k$H=u$+$j$^$9!#(J

     /pub/unix/subseq
     /pub/unix/subseq.awk

$B$,$=$l$G$9!#$b$7(J niguts $B$r$*;H$$$J$i!"(Jfindget $B$N4D6-$G;H$($k$h$&$K(J
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---
 Nobuyuki Fujita
  Department of Molecular Genetics  | nfujita@ddbj.nig.ac.jp
  National Institute of Genetics    | MHC01654 (Nifty-Serve)
  Mishima, Shizuoka 411, JAPAN      | FAX: +81-559-71-3651