Thread View: fj.sci.bio
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Started by Yoshihiro Ugawa
Wed, 16 Dec 1992 07:11
Network Server Announcement
Author: Yoshihiro Ugawa
Date: Wed, 16 Dec 1992 07:11
Date: Wed, 16 Dec 1992 07:11
656 lines
30011 bytes
30011 bytes
$@0dEA8&$N1-@n$G$9!#(J
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$@!!!!(Jfasta@nig.ac.jp
$@$G$9!#%a!<%kK\J8Cf$K(J help $@$H$$$&J8;zNs$r$$$l$k$H!"%5!<%P$O;HMQK!$r5-$7(J
$@$?(J help $@%U%!%$%k$r!":9=P?M$KJVAw$7$^$9!#B>$N(JE-MAIL SEVER$@!"Nc$($P!"(J
blast@nig.ac.jp$@$J$I$O!"6aF|8x3+$NM=Dj$G$9!#(J
$@!N(Jfasta mail server $@$N;HMQJ}K!!O(J
$@#1(J E-mail address
fasta@nig.ac.jp
$@#2(J parameter
$@!!!!!!!!K\%5!<%P$G$O0J2<$K<($7$?%Q%i%a%?$,MQ0U$5$l$F$$$^$9!"$=$l$i$O9T$N@hF,(J
$@!!!!!!!!$+$i5-=R$r;O$a!"6uGr$r$O$5$s$GFbMF$N;XDj$r9T$J$$$^$9!#(J
$@!!!!!!!!#19T$G#1%Q%i%a%?$N;XDj$r9T$J$$$^$9!#(J
$@!!!!!!!!Nc!K(J program$@!J%Q%i%a%?$N<oN`!K(J [$@6uGr$NA^F~(J] tfasta$@!J;XDjFbMF!K(J
^$@@hF,%+%i%`$+$i5-=R3+;O(J
$@!!(J program $@!J(Jfastaprogram $@$G$b2D!K(J
$@2r@O$NMQES$K9g$o$;!"(Jfasta tfasta lfasta $@$N$$$:$l$+$r;XDj$7$^$9!#(J
$@>JN,$7$?>l9g$O(J fasta $@$,@_Dj$5$l$^$9!#(J
$@!!(J datalib
$@!!!!!!!!8!:wBP>]$N%G!<%?%Y!<%9L>$r;XDj$7$^$9!#(J
$@8=:_MQ0U$5$l$F$$$k%G!<%?%Y!<%9$O0J2<$NDL$j$G$9!#(J
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$@!!!!!!!!(JGENBANK $@!J(JGENBANK$@!K(J
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PIR $@!J(JPIR$@!K(J
SWISS $@!J(JSWISS_PROT$@!K(J
DNA $@!J(JDDBJ $@$H(J GENBANK $@$H(J EMBL$@!K(J
PROTEIN $@!J(JPIR$@$H(JSWISS PROT$@!K(J
$@!!(J ktup
$@2r@O46EY$r;XDj$7$^$9!#(J
$@0lHLE*$J;XDjCM$O!"3K;@$N2r@O$G$O(J $@#3$+$i#6!"%?%s%Q%/<A$N2r@O$G$O#1$+(J
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EMBL, DNA $@$N;~$O#4$,@_Dj$5$l!"$=$l0J30$O#1$K@_Dj$5$l$^$9!#(J
$@!!(J scores
$@8!:w7k2L$N$$$/$D0J>e$N%9%3%"$r%j%9%H%"%C%W$9$k$+$r;XDj$7$^$9!#(J
$@%G!<%?%Y!<%98!:w$N7k2L!"$$$/$D0J>e$N%9%3%"$rM?$($i$l$?$b$N$r%j%9%H%"(J
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From: Toshiya Sakamaki <tsakamak>
To: fasta@nig.ac.jp
Subject: search by fasta
Date: Mon, 9 Nov 92 16:35:00 JST
program fasta
datalib DNA
ktup 6
scores 20
alignmnts 20
begin
>
tgcttgcattaccggatagatagcatgatcgatcatgcatgcatgcatgcatgctagctacaccgatgcac
gctagctagctacgatcgatgcatcgagcatgatcgttgatcacagtcagt
//
$@#4(J.$@#2(J $@JV?.%a!<%k(J
From: daemon@nigcray (Background Daemon)
To: Toshiya Sakamaki <tsakamak@genes.nig.ac.jp>
Subject: Re: search by fasta
Date: Mon, 9 Nov 92 16:44:34 JST
> : 129 nt
vs library
searching /home/nigcray/db/DB_SEARCH/FASTA/DATA/fasta.data library
initn init1
< 4 100 100:==================================================
8 0 0:
12 0 0:
16 0 0:
20 0 0:
24 158 158:==================================================
28 95 95:================================================
32 44 44:======================
36 13 13:=======
40 33 33:=================
44 1 1:=
48 2 2:=
52 0 0:
56 0 0:
60 0 0:
64 0 0:
--- $@ESCf0lItN,(J -----
156 0 0:
160 0 0:
>160 0 0:
217108 residues in 446 sequences
statistics exclude scores greater than 121
mean initn score: 21.9 (12.69)
mean init1 score: 21.9 (12.69)
346 scores better than 1 saved, ktup: 6, fact: 6
joining threshold: 46 scan time: 0:00:01
The best scores are: initn init1 opt
SYNCRYIAA 1845 bp ds-DNA SYN 21-M 48 48 63
SYNARGMTUB 249 bp ds-DNA SYN 30-S 45 45 66
SYNECOPRMA 759 bp ds-DNA SYN 15-M 42 42 51
SYNDHFRII 220 bp ds-DNA SYN 15-J 40 40 45
Genetic Sequence Data Bank, 4870 bases, 1390 checksum. 40 40 40
SYNBLKSP 2958 bp ds-DNA Circular SYN 06-D 40 40 40
SYNBLSKM 2958 bp ds-DNA Circular SYN 06-D 40 40 40
SYNBLSKP 2958 bp ds-DNA Circular SYN 06-D 40 40 40
--- $@ESCf0lItN,(J -----
SYN0SYNOR 204 bp ds-DNA SYN 16-F 32 32 32
SYNCRYIAA 1845 bp ds-DNA SYN 21-M 48 48 63
84.0% identity in 25 nt overlap
20 30 40 50 60 70
GATAGCATGATCGATCATGCATGCATGCATGCAT-GCTAGCTACACCGATGCACATGGCT
:::: ::: X::::::::::X ::
SYNCRY GGAGCCCACACTTGATGGACATCTTGAACAGCATAACTATCTACACCGATGCTCACAGAG
880 890 900 910 920 930
80 90 100 110 120
AGCTAGCTAGCTACGATCGATGCATCGAGCATGATCGTTGATCACAGTCAGT
SYNCRY GAGAGTATTACTGGTCTGGACACCAGATCATGGCCTCTCCAGTTGGATTCAGCGGGCCCG
940 950 960 970 980 990
SYNARGMTUB 249 bp ds-DNA SYN 30-S 45 45 66
60.3% identity in 73 nt overlap
--- $@ESCf0lItN,(J -----
10 20 30
TGCTTGCATTACCGGATAGATAGCATGATCGATCATGC
X::::::::X :: : :: :: ::
SYNCOL TGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATA---AGGCGCAGCGGTCGGGC
370 380 390 400 410
40 50 60 70 80 90
ATGCATGCATGCATGCTAGCTACACCGATGCACATGGCTAGCTAGCTAGCTACGATC---
:: : : : : : ::: : :: :: : : : ::: : ::: :
SYNCOL -TGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTA-CACCGAACTGA
420 430 440 450 460 470
100 110 120
GATGCATCGAGCATGATCGTTGATCACAGTCAGT
::: : : ::: ::: : :::
SYNCOL GATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACA
480 490 500 510 520 530
Library scan: 0:00:01 total CPU time: 0:00:02
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ftp 133.39.16.66
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$@%$%k$d(J/dna$@%G%#%l%/%H%j$K$"$k(JREADME.dna$@%U%!%$%k$K=q$+$l$F$$$^$9!#$3$l$i(J
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$@$$$^$9!#$3$N%G!<%?$rE>Aw$7$?$$>l9g$O<!$N$h$&$K$7$^$9!#(J
% ftp ftp.nig.ac.jp
Connected to ftp.nig.ac.jp.
220 night FTP server (Version 5.63 Mon Jul 13 15:27:15 JST 1992) ready.
Name (ftp.nig.ac.jp:mishima): anonymous
331 Guest login ok, send ident as Your E-Mail address).
Password: <$@$3$3$G(Jyugawa@ddbj.nig.ac.jp$@Ey!"<+J,$N(JE-mail$@%"%I%l%9$rF~$l$^$9(J>
230 Guest login ok, access restrictions apply.
ftp> cd /dna/D/00/06/D00066
250 CWD command successful.
ftp> ls -la
200 PORT command successful.
150 Opening ASCII mode data connection for /bin/ls.
total 20
drwxr-xr-x 2 dbm 512 Aug 28 02:13 .
drwxr-xr-x 11 dbm 512 Aug 27 13:56 ..
-rw-r--r-- 1 dbm 5934 Aug 27 08:41 D00066.D
-rw-r--r-- 1 dbm 4784 Aug 28 02:13 D00066.E
-rw-r--r-- 1 dbm 6240 Aug 27 16:42 D00066.L
226 Transfer complete.
remote: -la
272 bytes received in 1.1 seconds (0.24 Kbytes/s)
ftp> get D00066.L
200 PORT command successful.
150 Opening ASCII mode data connection for D00066.L (6240 bytes).
226 Transfer complete.
local: D00066.L remote: D00066.L
6335 bytes received in 0.11 seconds (54 Kbytes/s)
ftp> quit
221 Goodbye.
%
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FAX(0559-75-6040)$@$G$4O"Mm$/$@$5$$!#Aa5^$K8x3+$N<jB3$-$r$H$j$^$9!#(J
$@#3!K(JWAIS SERVER$@!V%M%C%H%o!<%/J8=q8!:wJ}<0$rMxMQ$7$?%5!<%P!<!W(J
$@!!(JWAIS$@$O(Jthink.com$@Ey$G3+H/$5$l$?%7%9%F%`$G(JWide Area Information
Servers$@$N$3$H$G$9!#%G!<%?%Y!<%9Fb$NG$0U$NJ8;zNs$KBP$9$k%$%s%G%C%/%9$r(J
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$@%$%s%G%C%/%9$r;}$A!"%G!<%?%Y!<%9Fb$NG$0U$NJ8;zNs$K$h$k%-!<%o!<%I8!:w$,(J
$@$G$-$k$N$,FCD9$G$9!#(J
$@!!#D#D#B#J$N(JWAIS source(dna.src)$@$O0J2<$NDL$j$G$9!#(J
$@!!!!(J(:source
$@!!!!(J :version 3
$@!!!!(J :ip-address "133.39.16.66"
$@!!!!(J :ip-name "night"
$@!!!!(J :tcp-port 210
$@!!!!(J :database-name "dna"
$@!!!!(J :cost 0.00
$@!!!!(J :cost-unit :free
$@!!!!(J :maintainer "sgk@night"
$@!!!!(J :description "Server created with WAIS release 8 b5 on Sep 9 00:25:42 1992
$@!!!!!!!!(J by sgk@night
$@!!!!(JThe files of type bio used in the index were:
$@!!!!(J /ftp/dna
$@!!!!(J"
$@!!!!(J)
$@!N(JWAIS SERVER$@$N;HMQJ}K!!O(J
WAIS$@$N(JClient$@$r%$%s%9%H!<%k$7$?$"$H!"8!:w$r3+;O$9$kA0$K!"BP>]$H$J$k%5!<(J
$@%P!<$r;XDj$9$k$?$a$N4D6-$r@0$($^$9!#6qBNE*$K$O!"%[!<%`%G%#%l%/%H%j$K(J
wais-sources$@$H$$$&%G%#%l%/%H%j$r:n$j!"$=$NCf$KBP>]$H$J$k%5!<%P!<$N(J"
$@%G!<%?%Y!<%9L>(J.src"$@$H$$$&%U%!%$%k$r:n$j$^$9!#(J
% cd
% mkdir wais-sources
% cd wais-sources
$@0dEA8&$N(Jwais$@$rMxMQ$9$k$K$O!"$3$N%G%#%l%/%H%j$NCf$KA0=R$N(J dna.src $@$r:n(J
$@@.$7$^$9!#(Jnight.locus.nig.ac.jp$@$r;HMQ$7$F$$$k>l9g$O!"(J
/ftp/other_wais/dna.src$@$K$3$N%U%!%$%k$,MQ0U$7$F$"$k$N$G%3%T!<$7$F$/$@(J
$@$5$$!#$5$F!"<B:]$K(Jwais$@$rMxMQ$9$k%3%^%s%I$O!"(Jwaissearch$@$H$$$&%3%^%s%I$G(J
$@$9$,!"0dEA8&$G$O!"$h$j4JC1$K;HMQ$G$-$k$h$&(Jws$@$H$$$&%3%^%s%I$K$7$F$"$j$^(J
$@$9!#(J
ws $@%G!<%?%Y!<%9L>(J $@%-!<%o!<%I(J
$@Nc$($P!"0dEA8&$N%G!<%?%Y!<%9$+$i(Jmeningitidis$@$H(Jpenicillin$@$H$$$&%-!<%o!<(J
$@%I$rN>J};}$D%G!<%?$r8!:w$r$9$k$K$O!"0J2<$N$h$&$K$7$^$9!#(J
night% ws dna meningitidis and penicillin
waissearch -h night -d dna -p 210 meningitidisandpenicillin
Search Response:
NumberOfRecordsReturned: 10
1: Score: 1000, lines: 54 'M26644.D N.meningitidis penicillin-bindin'
2: Score: 1000, lines: 65 'M26644.L N.meningitidis penicillin-bindin'
3: Score: 973, lines: 64 'M26644.E N.meningitidis penicillin-bindin'
4: Score: 703, lines: 77 'X15276.L Neisseria meningitidis penA gene'
5: Score: 676, lines: 75 'X15276.E Neisseria meningitidis penA gene'
6: Score: 649, lines: 52 'M26645.L N.flavescens penicillin-binding '
7: Score: 649, lines: 56 'M26645.E N.flavescens penicillin-binding '
8: Score: 378, lines: 68 'Z17308.E N.cinerea penA gene for penicill'
9: Score: 378, lines: 68 'Z17309.E N.cinerea penA gene for penicill'
10: Score: 378, lines: 67 'Z17310.E N.cinerea penA gene for penicill'
View document number [type 0 or q to quit]:
$@$3$3$G!";2>H$7$?$$HV9f$rF~NO$7$^$9!#(J0 $@$^$?$O(J q $@$rF~NO$9$k$H!"JL$N%-!<(J
$@%o!<%I$rF~NO$9$k$3$H$,$G$-$^$9!#0J2<$N$h$&$K!";2>H$7$?$$HV9f$rF~NO$7$?(J
$@>l9g$O!"$=$N%U%!%$%k$,I=<($5$l$^$9!#(J
View document number [type 0 or q to quit]: 1
Headline: M26644.D N.meningitidis penicillin-bindin
LOCUS NGOPENAM 1797 bp ds-DNA BCT 15-JUN-1990
DEFINITION N.meningitidis penicillin-binding protein 2 (penA) gene, complete
cds.
ACCESSION M26644
KEYWORDS penicillin-binding protein 2.
SOURCE N.meningitidis (strain S738; serogroup B) DNA.
ORGANISM Neisseria meningitidis
Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Neisseriaceae.
REFERENCE 1 (bases 1 to 1797)
AUTHORS Spratt,B.G., Zhang,Q.-Y., Jones,D.M., Hutchison,A., Brannigan,J.A.
and Dowson,C.G.
TITLE Recruitment of a penicillin-binding protein gene from Neisseria
flavescens during the emergence of penicillin resistance in
Neisseria meningitidis
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 86, 8988-8992 (1989)
STANDARD full staff_review
COMMENT Draft entry and computer-readable sequence for [1] kindly submitted
by B.G.Spratt, 02-AUG-1989.
FEATURES Location/Qualifiers
CDS 25..1773
/note="penicillin-binding protein 2"
/codon_start=1
BASE COUNT 458 a 441 c 495 g 403 t
ORIGIN
1 ggataataat aacgagaagt aaaaatgttg attaagagcg aatataagcc tcggatgctg
61 cccaaagaag agcaggtcaa aaagccgatg accagtaacg gacggatcag cttcgtcctg
121 atggcaatag cggtcttgtt tgccggtctg attgcccgcg gactgtatct gcagacggta
181 acgtataact ttttgaaaga acagggcgac aaccggattg tgcggactca aacattgccg
241 gctacacgcg gtacggtttc ggaccggaac ggtgcggttt tggcgttgag tgcgccgacg
301 gagtccctgt ttgccgtgcc taaagagatg aaggaaatgc cgtctgccgc acaattggaa
361 cgcctgtccg agcttgtcga tgtgccggtt gatgttttga ggaacaagct cgaacagaaa
421 ggcaagtcgt ttatctggat taagcggcag ctcgatccca aggttgccga agaggtcaaa
481 gccttgggtt tggaaaactt tgtatttgaa aaagaattaa aacgccatta cccgatgggc
541 aacctgtttg cacacgtcat cggatttacc gatattgacg gcaaaggtca ggaaggtttg
601 gaactttcgc ttgaagacag cctgcatggc gaagacggcg cggaagtcgt tttgcgggac
661 cggcagggca atattgtgga cagcttggac tccccgcgca ataaagcccc gaaaaacggc
721 aaagacatca tcctttccct cgatcagagg attcagacct tggcctatga agagttgaac
781 aaggcggtcg aataccatca ggcaaaagcc ggaacggtgg tggttttgga tgcccgcacg
841 ggggaaatcc tcgccttggc caatacgccc gcctacgatc ccaacaggcc cggctgggca
901 gacagcgaac agcgccgcaa ccgcgccgta accgatatga ttgaacccgg ctctgccatg
961 aagccgttta ccattgccaa agcattggat tccggcaaag tggatgcaac cgatacattc
1021 aataccctgc cttacaaaat cggtccggct accgtacaag atacccacgt ttatcctact
1081 ttggatgtgc gcggcattat gcaaaaatct tccaacgtcg gtaccagtaa actttctgcc
1141 atgtttacgc ctaaagaaat gtacgatttc tatcacgatt taggtgtggg cgtgcgtatg
1201 cactcgggct ttccgggcga aactgcaggt ttgttgagaa attggcgcag gtggcggcct
1261 atcgaacagg cgacgatgtc tttcggttac ggcctgcaat tgagcctgct gcaattggcg
1321 cgcgcctata ccgcactgac gcacgacggc gttttgctgc cggtcagctt tgaaaaacaa
1381 gcggttgcgc ctaaaggcaa gcgcgtcatc aaagcctcta ctgcaaaaaa agtgcgcgag
1441 ttgatggttt ccgttactga agccggcggt accggtactg caggtgctgt ggatggtttc
1501 gacgtaggtg cgaaaaccgg tacggcgcgc aaactagtca atggccgcta tgtggacaac
1561 aaacacgtcg gtacgtttat cggttttgct ccggctaaaa atccacgcgt gattgtggcc
1621 gttaccatcg acgagccgac tgccaacggc tattacggcg gcgtggttgt cggtcccgta
1681 ttcaaagaag tcatgagcgg aagcttgaac atcttgggcg tttccccgac caagcctttg
1741 agtaataccg ctactgtcaa agtaccgtca taatccaaac aatcaaagag atattgt
View document number [type 0 or q to quit]: q
Search for new words [type q to quit]: q
q $@$rF~NO$9$F=*N;$7$^$9!#(J
$@#4!K(JGOPHER SERVER$@!V%-%c%s%Q%9%M%C%H%o!<%/J}<0$rMxMQ$7$?%5!<%P!<!W(J
$@!!(JGOPHER$@$O%_%M%=%?Bg3X$G3+H/$5$l!"A0=R$N(JANONYMOUS-FTP$@$d(JWAIS$@$r<h$j9~(J
$@$_!"99$K2~NI$,2C$($i$l$?:G?7$N%M%C%H%o!<%/>pJs%7%9%F%`$G$9!#%M%C%H%o!<(J
$@%/Fb$r<+M3$K9T$-Mh$7!"8!:w!"I=<(!"E>Aw$r<+F0E*$K9T$&!"M%$l$?%^%s!&%^%7(J
$@%s!&%$%s%?!<%U%'%$%9$r;}$C$F$$$^$9!#MxMQ$9$k$K$O!"(JGOPHER client$@$rMxMQ(J
$@<T$,3F<+;HMQ$7$F$$$k7W;;5!$KMQ0U$7$^$9!#$3$N%=%U%H%&%(%"$O(J
ANONYMOUS-FTP$@$G8x3+$5$l$F$$$F!"(Jboombox.micro.umn.edu:/pub/gopher$@$K(J
Macintosh-TurboGopher, NeXT, PC_client, Rice_CMS, Unix, VMS,
Vienna_CMS, mvs, os2$@MQ$N(Jclient$@$,$"$j$^$9!#(J
$@!!#D#D#B#J$N(JGOPHER$@$O(JANONYMOUS-FTP SERVER$@$GDs6!Cf$N%G!<%?$rBP>]$K(JWAIS$@$N(J
$@G$0U$NJ8;zNs$N8!:w5!G=$r<h$j9~$s$G$$$^$9!#$5$i$K!"@$3&$G2TF/Cf$N<g$J%P(J
$@%$%*4XO"$N(JGOPHER SERVER$@$X$N%j%s%/$bMQ0U$7$F$$$^$9!#(J
$@!!#D#D#B#J$N(JGopher server$@$O0J2<$NDL$j$G$9!#(J
$@!!(J Name=DNA Data Bank of Japan, National Institute of Genetics, Mishima
$@!!(J Type=1
$@!!(J Port=70
$@!!(J Path=
$@!!(J Host=gopher.nig.ac.jp
gopher$@$N(Jclient$@$O2?<oN`$b$"$j$^$9!#$3$3$G$O!"(Jtelnet$@$J$I$N(Jtty$@C<Kv$+$iMx(J
$@MQ$9$k(Jgopher$@!"(JInternet$@$KD>7k$5$l$?(JMac$@$+$iMxMQ$9$k(JTurboGopher$@!"(JX$@C<Kv$+(J
$@$iMxMQ$9$k(Jxgopher$@$N>R2p$r$7$^$9!#(J
$@#4(J-$@#1!K(Jgopher$@$N;HMQJ}K!!'(J
client$@$r%$%s%9%H!<%k$7$?8e!"(J
$@!!(J% gopher gopher.nig.ac.jp 70
$@$H$9$k$H!"#D#D#B#J$N(JGOPHER SERVER$@$,8F$S=P$;$^$9!#(J
$@Bh#12hLL(J Internet Gopher Information Client v1.03
Root gopher server: night.locus.nig.ac.jp
1. DDBJ_gopher/
2. DDBJ_wais/
3. Maintainer_"ftp@nig.ac.jp".
4. README.
5. about_DDBJ/
--> 6. dna/
7. joho/
8. ls-lR.
9. ls-lR.
10. ls-lR.diff.
11. ls-lR.diff.
12. ls-lR.full.
13. ls-lR.full.
14. other_ftp/
15. other_gopher/
16. other_wais/
17. protein/
18. pub/
Press ? for Help, q to Quit, u to go up a menu Page: 1/2
$@$3$3$G!!(J?$@$rF~NO$9$k$H4JC1$JA`:nJ}K!$,I=<($5$l$^$9!#(J
$@%+!<%=%k$r#6$KF0$+$7!"#D#N#A>pJs$N2hLL$K0\$j$^$9!#(J
$@Bh#22hLL(J Internet Gopher Information Client v1.03
dna
1. D/
2. J/
3. K/
4. L/
5. M/
6. Maintainer_"ddbj@ddbj.nig.ac.jp".
7. N/
8. README.dna.
9. S/
10. V/
11. X/
12. Y/
13. Z/
--> 14. index_search.src <?>
15. index_search_is_OFF_on_Sunday.
Index word(s) to search for: Penicillin
$@%+!<%=%k$r#1#4$KF0$+$7%j%?!<%s%-!<$r2!$7!"(JPenicillin$@$GJ8;zNs8!:w$r$7$^(J
$@$9!#(J
$@Bh#32hLL(J Internet Gopher Information Client v1.03
index_search.src: Penicillin
--> 1. M32226.L S.sanguis penicillin-binding pro.
2. M32227.L S.oralis penicillin-binding prot.
3. M32228.L S.oralis penicillin-binding prot.
4. M32226.E S.sanguis penicillin-binding pro.
5. M32227.E S.oralis penicillin-binding prot.
6. M32228.E S.oralis penicillin-binding prot.
7. M32091.L N.gonorrhoeae penicillin binding.
8. M32091.E N.gonorrhoeae penicillin binding.
9. X06479.E E. coli dacA gene for penicillin.
10. X59460.L E.coli dacB gene for penicillin-.
11. X59460.E E.coli dacB gene for penicillin-.
12. M26645.L N.flavescens penicillin-binding .
13. M26645.E N.flavescens penicillin-binding .
14. M26644.D N.meningitidis penicillin-bindin.
15. M26644.L N.meningitidis penicillin-bindin.
16. M26644.E N.meningitidis penicillin-bindin.
17. M90528.N Streptococcus oralis penicillin-.
18. M90528.L Streptococcus oralis penicillin-.
Press ? for Help, q to Quit, u to go up a menu Page: 1/3
$@$3$3$G!"8+$?$$%G!<%?$rA*$s$G%j%?!<%s%-!<$r2!$9$H!"0J2<$N$h$&$K%G!<%?$,(J
$@I=<($5$l$^$9!#(J
$@Bh#42hLL(J
LOCUS STRPBP2BA 1455 bp ds-DNA BCT 23-FEB-1990
DEFINITION S.sanguis penicillin-binding protein 2B (penA) gene, 5' end.
ACCESSION M32226
KEYWORDS penicillin-binding protein 2B.
SOURCE S.sanguis (strain 1907-penicillin resistant) DNA.
ORGANISM Streptococcus sanguis
Prokaryotae; Firmicutes; Firmibacteria; Gram-positive cocci;
Streptococcaceae.
REFERENCE 1 (bases 1 to 1455)
AUTHORS Dowson,C.G., Hutchison,A., Woodford,N., Johnson,A.P., George,R.C.
and Spratt,B.G.
TITLE Penicillin-resistant viridans streptococci have obtained altered
penicillin-binding protein genes from penicillin-resistant strains
of Streptococcus pneumoniae
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 5858-5862 (1990)
STANDARD full staff_entry
COMMENT Draft entry and computer-readable sequence [1] kindly submitted by
B.G. Spratt, 16-FEB-1990, for release after publication.
FEATURES Location/Qualifiers
CDS <1..1436
--More--(28%)
$@0J2<!"I=<($,B3$-$^$9!#(Jq$@$r2!$9$HESCf$G=*N;$G$-$^$9!#(J
TurboGopher $@$NMxMQJ}K!!'(J
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$@MxMQ$9$k(JMac$@$O(JInternet$@$KD>7k$5$l$F$$$k$3$H$,>r7o$G$9!#(JTurboGopher$@$r5/F0(J
$@$9$k$H$9$0$K%_%M%=%?Bg3X$K$D$J$,$j$^$9$+$i!"(JFile$@$+$i(JAnother Gopher$@$rA*(J
$@$S!"(Jgopher.nig.ac.jp$@$H=q$-9~$_(JOK$@$r%/%j%C%/$9$k$3$H$G0dEA8&$H@\B3$G$-$^(J
$@$9!#(J
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xgopher $@$O!"(Jgopher $@%3%^%s%I$r(JX windows $@$^$?$O(JOpen Windows $@>e$GMxMQ$G$-(J
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gopher.nig.ac.jp $@$r;XDj$9$l$P!"B>$KFCJL$J@_Dj$J$7$K0dEA8&$K@\B3$9$k$3(J
$@$H$,$G$-$^$9!#%$%s%9%H!<%k$K$O$"$kDxEY$N(Junix$@$NCN<1$,I,MW$G$9!#(J
$@;29MJ88%(J
$@#1!K(JFrequently Asked Questions (FAQ) for WAIS, FAQ.txt found in
$@!!!!(JAnonymous-ftp Host:fly.bio.indiana.edu File:/util/wais/wais-8-b5.tar.Z
$@#2!K(JGopher-faq, found in Anonymous-ftp Host:pit-manager.mit.edu,
$@!!!!(JFile:/pub/usenet/news.answers/gopher-faq
$@#3!K(JWAIS-faq, found in Anonymous-ftp Host:pit-manager.mit.edu,
$@!!!!(JFile:/pub/usenet/news.answers/wais-faq
$@#4!K(JUSENET News: comp.infosystems, comp.infosystems.gopher,
$@!!!!(Jcomp.infosystems.wais
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