Article View: sci.engr
Article #420Matrix sparsity question - the summary!
From: Ron Graham
Date: Mon, 04 Jan 1993 15:12
Date: Mon, 04 Jan 1993 15:12
122 lines
5981 bytes
5981 bytes
Here is the original question: ********************************************************************** Is there a measure for the "sparsity" (or maybe I should say "sparseness"?) of a matrix? We know that a sparse matrix has a lot of zeroes in it. But who decides when the matrix is sparse? Are there degrees of sparseness? The answer to this question will help us determine a test plan for a matrix inversion algorithm we are currently testing in an engineering application. ********************************************************************** The following are the responses, condensed. Thanks to all for the help. RG From: mjs@hubcap.clemson.edu (M. J. Saltzman) Subject: Re: Question about "sparsity" of matrices The measure is just nz/n^2 (and the common term is "sparsity"). What the cutoff is between a sparse matrix and a dense matrix is depends heavily on the application and the machine. It's either the point at which a sparse storage format takes less space than a dense format, or (more to the point) the point below which your code runs faster for the sparse storage format than for the dense storage format (considering the overhead necessary to take advantage of sparsity). There's no universal number that people agree on as a cutoff (I know a sparse matrix when I see one!). If you're factoring, I'd guess that between 10% and 20% is getting dense, but it varies a lot depending on other aspects of the matrix structure (where the nonzeros are is as important as how many--the factor can be much denser than the original matrix). There's lots and lots of literature--high-performance sparse matrix methods are one of the hottest topics in computational linear algebra (as you might guess). See George and Liu's 1981 book, or Duff, Erisman and Reid's book (1984?) for starters. Then there's the whole area of iterative methods for sparse problems (mostly preconditioned conjugate gradient methods). From: "V. Phaniraj" <phaniraj@plains.NoDak.edu> Subject: Re: Question about "sparsity" of matrices One common measure of "sparsity" used in my area (electric power systems) is the "fill-in", the number of non-zero non-diagonal entries, as a percentage of the total size of the array. A lot of work has been done in re-odering the matrix rows and columns to preserve sparsity after a matrix inversion, and for handling perturbations in the original element values. references tinney and walker, proc IEEE, nov 1967, pp 1801-1809, "direct solution of sparse network equations by optimally ordered triangular factorization" ( this is a classic in my area) stott & hobson, proc IEEE, jan 1971, "solution of large networks by ordered elimination- comparison of ordering schemes" newer work that may be of interest chan and brandwajn, "partial matrix refactorization", IEEE transactions on power systems, feb 1986, pp 193-200. tinney, chan and brandwajn, "sparse vector methods", IEEE transactions on power apparatus and systems, Feb 1985, pp 295-301. From: petry@math.washington.edu Subject: Re: Question about "sparsity" of matrices A closely related idea is the "block" dimension, log(N)/log(n), where N is the number of non-zero elements in the nXn matrix. Note that for the identity matrix, the dimension is 1, and for a matrix with no zero elements the dimension is 2. This idea comes up in the study of fractals. The book by Falconer might be a good place to look. From: haddadi%sipi.usc.edu@usc.edu (Navid Haddadi) Subject: Re: Question about "sparsity" of matrices I have never seen a definition. But every sparse matrix that I have seen has the property that it has O(N) non-zero elements and O(N^2) zeros. For example, a tridiagonal matrix is sparse (or a block tridiag). But a circular or Toeplitz is not sparse despite the fact that multiplications and inverses can be computed in O(nlogn) and O(n^2), resp. From: amstanko@Athena.MIT.EDU Subject: Re: Question about "sparsity" of matrices I do not think that there exists an official definition of spasity. A rule of the thumb could be <= 10 % nonzero elts. or so. Sparse matrices used to be a hot topic in power systems and in other network-flow problems. I think there is a book by Brameller in a power system contex. Ask numerical analysts before you code - many things exist already, there is a Yale package for sparse matrices. From: andrew@rentec.com (Andrew Mullhaupt) Subject: Re: Question about "sparsity" of matrices A matrix may be usefully considered sparse if so many of its elements are zero that it pays to keep track of the nonzero elements only, and this obviously depends on what kind of operations you are doing. A simple measure closely related to this is the fraction of nonzero elements, and another similarly notion of sparsity is for families of matrices, i.e. some people consider a family of matrices to be sparse when the fraction of nonzero elements tends to zero as the size of the matrix tends to infinity. There are other important exploitable structures for matrices, which can be observed in sparse matrices. Most important are polydiagonal and band matrices, and then block polydiagonal matrices. Special algorithms and data structures are used to exploit sparseness in each case. So the bottom line is that _you_ get to decide what sparseness is by showing how to exploit it.
Technical Details
Message-ID:
<4JAN199310122279@ariel.lerc.nasa.gov>Path:
arc1-ca.pugleaf.net!sparky!uunet!usc!cs.utexas.edu!qt.cs.utexas.edu!yale.edu!spool.mu.edu!agate!usenet.ins.cwru.edu!eagle!ariel.lerc.nasa.gov!ecaxronShow Full Headers
Complete Article Headers
Newsgroups: sci.engr,sci.math Path: arc1-ca.pugleaf.net!sparky!uunet!usc!cs.utexas.edu!qt.cs.utexas.edu!yale.edu!spool.mu.edu!agate!usenet.ins.cwru.edu!eagle!ariel.lerc.nasa.gov!ecaxron From: ecaxron@ariel.lerc.nasa.gov (Ron Graham) Subject: Matrix sparsity question - the summary! Message-ID: <4JAN199310122279@ariel.lerc.nasa.gov> News-Software: VAX/VMS VNEWS 1.41 Sender: news@eagle.lerc.nasa.gov Nntp-Posting-Host: ariel.lerc.nasa.gov Organization: NASA Lewis Research Center Date: 4 Jan 1993 10:12 EST Lines: 122