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Article #77How to visualize a pdb-like file
From: Horacio horacio
Date: Tue, 11 Nov 2003 14:43
Date: Tue, 11 Nov 2003 14:43
25 lines
1790 bytes
1790 bytes
Hi everybody. I have a pdb-like file which represents the model of a molecule. The exact format is the following: x1, y1, z1, r1 . . . xn, yn, zn, rn where each line corresponds to each bead of the model and it describes the Cartesian coordinates of the bead and its radius. My questions are: Does anybody know how to visualize this file in a similar way that in rasmol you can visualize a pdb structure ? or Does anybody know how to convert this file to a pdb (or pdb-like) format ? Thanks !
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fd9c4,3f5e68e288426555,start X-Google-Attributes: gidfd9c4,public X-Google-Thread: f4886,3f5e68e288426555,start X-Google-Attributes: gidf4886,public X-Google-Thread: f7944,3f5e68e288426555,start X-Google-Attributes: gidf7944,public X-Google-Thread: 10b271,3f5e68e288426555,start X-Google-Attributes: gid10b271,public X-Google-ArrivalTime: 2003-11-11 06:43:36 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news2.google.com!news.maxwell.syr.edu!newsfeed.mathworks.com!bloom-beacon.mit.edu!hgmp.mrc.ac.uk!net.bio.net From: horacio@um.es (Horacio horacio@um.es) Newsgroups: sci.polymers,bionet.molbio.proteins,sci.chem,sci.physics Subject: How to visualize a pdb-like file Date: 11 Nov 2003 14:43:34 -0000 Organization: http://groups.google.com Lines: 26 Sender: mod-xtal@hgmp.mrc.ac.uk Message-ID: <6e6c00d7.0311110221.606cc1ee@posting.google.com> NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 8bit X-Trace: niobium.hgmp.mrc.ac.uk 1068561814 5944 193.62.192.80 (11 Nov 2003 14:43:34 GMT) X-Complaints-To: news@net.bio.net NNTP-Posting-Date: Tue, 11 Nov 2003 14:43:34 +0000 (UTC) X-Original-To: bionet-xtallography@net.bio.net