Article View: sci.techniques.xtallography
Article #276HEAVY and HASSP, version 4.0
From: Tom Terwilliger
Date: Fri, 03 Nov 1995 00:00
Date: Fri, 03 Nov 1995 00:00
64 lines
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4049 bytes
Version 4 of HEAVY I am pleased to announce that version 4 of HEAVY is now available. The HEAVY program contains the old "HEAVY" and "HASSP" programs in an integrated package that is easy to use and that runs on a variety of unix and VMS machines. Some of the major new features of HEAVY are CORRELATED PHASING, BAYESIAN WEIGHTING, and BAYESIAN DIFFERENCE REFINEMENT (see below for brief descriptions of these features). ________________________________________________________________________ HOW TO GET HEAVY version 4: HEAVY is distributed free of charge for non-commercial users. All users need to get an official of their institution to sign a license agreement. To obtain a license, please contact Nancy Cameron at the Los Alamos Industrial Partnership Office in the following way: Email: Ncameron@lanl.gov 1. Specify NON-COMMERCIAL or COMMERCIAL license 2. If you are a University of California institution, say so 3. Your name and email address. If you have an anonymous ftp site, please list it. 4. Name and address of person who will sign for your institution (i.e., person in your business office. This person will know if they can sign for the institution. Faculty at universites cannot.) 5. Node name(s) of single site or cluster of computers where HEAVY will be used. ________________________________________________________________________ FOR FURTHER INFORMATION ON HEAVY: contact me at "terwilliger@LANL.gov". --Tom Terwilliger ________________________________________________________________________ NEW FEATURES OF HEAVY: CORRELATED PHASING allows you to make use of data from a set of non-isomorphous derivatives that share the same non-isomorphism. In effect, correlated phasing uses the information in the differences among derivatives that is ignored by Blow-Crick phasing. If there is correlated non-isomorphism, these differences actually contain much of the phasing information and using them can make a dramatic improvement in phasing power. BAYESIAN WEIGHTING macromolecular atomic refinement consists of WEIGHTS of the form WGT=1/(sigma**2+E**2) where the E**2 values are estimated from rms differences between observed and calculated amplitudes of structure factors. A structure factor file that can be read directly by X-PLOR is generated. This weighting scheme leads to lower errors in coordinates than unit weighting. BAYESIAN DIFFERENCE REFINEMENT is a method for refining a macromolecular structure (a "variant") that is very similar to a structure that has already been solved (the "native"). By refining differences between native and variant observed structure factor amplitudes against differences between native and variant calculated structure factor amplitudes, very accurate differences between the two structures can be obtained. Difference refinement requires that the native and variant structures be similar. In Bayesian difference refinement, an optimal weighting scheme for combining difference refinement and conventional refinement is used. Bayesian difference refinement allows all the data for the variant structure to be used and represents a substantial improvement over both conventional and difference refinement. ________________________________________________________________________
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fcf0b,c92ae8044087033f,start X-Google-Attributes: gidfcf0b,public X-Google-Thread: f804b,c92ae8044087033f,start X-Google-Attributes: gidf804b,public From: Tom Terwilliger <terwilliger@lanl.gov> Subject: HEAVY and HASSP, version 4.0 Date: 1995/11/03 Message-ID: <47e42j$4rf@newshost.lanl.gov> X-Deja-AN: 118546522 content-type: text/plain; charset=us-ascii organization: Los Alamos National Laboratory x-url: news:sci.techniques.xtallography mime-version: 1.0 newsgroups: sci.techniques.xtallography,bionet.xtallography x-mailer: Mozilla 1.1N (Macintosh; I; 68K)