Article View: sci.techniques.xtallography
Article #44Re: Generating LARGE Cartesian Lattices?
From: Uncle Al
Date: Wed, 16 Oct 2002 15:51
Date: Wed, 16 Oct 2002 15:51
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3042 bytes
Saco wrote: > > Have you checked Mercury? > http://www.ccdc.cam.ac.uk/prods/mercury/index.html > It can read .cif and save as .mol, but I'm not sure that's what you > are looking for. My needs as stated are very specific. Given the crystal strucure of elemental tellurium, ICSD 65692.CIF (fractional coordinates), generate an (unordered) *.XYZ list of Cartesian coordinates for a given radius (or number of unit cells in each direction x,y,z). Almost any crystal software package will do this, ORTEP to ATOMS. The *problem* is that I need a 120-150 A radius, or about 250,000 atoms (about 9 MB of output). Loathsome fat, stupid, and incapable Windows freezes solid at those memory requirements if any attempt is made to order the list or output in a window instead of a scratch file. I have exhausted obscenities in seven languages damning BillGates to Hell Mercury is a very capable, very sophisticated package. I'll give it a run. I suspect I need a very primitive, very incapable program that just builds a lattice to a given radius. I'm looking at crystallff. It could be the perfect tool! Its extensive documentation very neatly omits giving even a single example of an input sequence. I'm down to one fatal error. > The following link gives high-pressure Te structure. > http://cst-www.nrl.navy.mil/lattice/struk/Te.html "8^>) I specifically need the helical P3(1)21/P3(2)21 hexagonal structure. > BTW, there has been recently a new solution proposed for the > crystallographic phase problem. > http://xxx.lanl.gov/abs/cond-mat/0209690 Isn't that something? It will be interesting to see if it is adopted as a general method. Thanks for the help. -- Uncle Al http://www.mazepath.com/uncleal/ (Toxic URL! Unsafe for children and most mammals) "Quis custodiet ipsos custodes?" The Net!
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X-Google-Language: ENGLISH,ASCII-7-bit X-Google-Thread: fcf0b,b1027c29d7d8962b X-Google-Attributes: gidfcf0b,public X-Google-Thread: f804b,b1027c29d7d8962b X-Google-Attributes: gidf804b,public X-Google-ArrivalTime: 2002-10-16 08:51:18 PST Path: arc1-ca.pugleaf.net!archiver1.google.com!news1.google.com!newsfeed.stanford.edu!news.uchicago.edu!newsfeed.cs.wisc.edu!newshub.sdsu.edu!west.cox.net!cox.net!p01!news2.west.cox.net.POSTED!53ab2750!not-for-mail Message-ID: <3DAD8AE7.59098CA4@hate.spam.net> From: Uncle Al <UncleAl0@hate.spam.net> Organization: The Noble Krell X-Mailer: Mozilla 4.78 [en] (Win98; U) X-Accept-Language: en MIME-Version: 1.0 Newsgroups: sci.techniques.xtallography,bionet.xtallography Subject: Re: Generating LARGE Cartesian Lattices? References: <3DAC8E95.4E7ACFD1@hate.spam.net> <85160b48.0210151846.74eeb9f6@posting.google.com> Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Lines: 47 Date: Wed, 16 Oct 2002 15:51:16 GMT NNTP-Posting-Host: 68.5.243.16 X-Complaints-To: abuse@cox.net X-Trace: news2.west.cox.net 1034783476 68.5.243.16 (Wed, 16 Oct 2002 11:51:16 EDT) NNTP-Posting-Date: Wed, 16 Oct 2002 11:51:16 EDT