Thread View: bionet.molbio.evolution
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Started by Roger
Tue, 01 Nov 2011 10:54
回复： phylogeny from mtDNA sequences
Author: Roger
Date: Tue, 01 Nov 2011 10:54
Date: Tue, 01 Nov 2011 10:54
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10996 bytes
---264029021-1313154562-1320144867=:69365 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi, Pro. Barker=20 =C2=A0=C2=A0=C2=A0 I also met this issue in mine research. The different nu= cleotide substitution rate=C2=A0between=C2=A0D-loop and Cytb gene=C2=A0may = result in the inconsistent topology.=20 =C2=A0 =C2=A0 --- 11=E5=B9=B411=E6=9C=881=E6=97=A5=EF=BC=8C=E5=91=A8=E4=BA=8C, mol-evol-r= equest@oat.bio.indiana.edu <mol-evol-request@oat.bio.indiana.edu> =E5=86=99= =E9=81=93=EF=BC=9A =E5=8F=91=E4=BB=B6=E4=BA=BA: mol-evol-request@oat.bio.indiana.edu <mol-evol= -request@oat.bio.indiana.edu> =E4=B8=BB=E9=A2=98: Mol-evol Digest, Vol 65, Issue 1 =E6=94=B6=E4=BB=B6=E4=BA=BA: mol-evol@magpie.bio.indiana.edu =E6=97=A5=E6=9C=9F: 2011=E5=B9=B411=E6=9C=881=E6=97=A5,=E5=91=A8=E4=BA=8C,= =E4=B8=8A=E5=8D=881:03 Send Mol-evol mailing list submissions to =C2=A0=C2=A0=C2=A0 mol-evol@net.bio.net To subscribe or unsubscribe via the World Wide Web, visit =C2=A0=C2=A0=C2=A0 http://www.bio.net/biomail/listinfo/mol-evol or, via email, send a message with subject or body 'help' to =C2=A0=C2=A0=C2=A0 mol-evol-request@net.bio.net You can reach the person managing the list at =C2=A0=C2=A0=C2=A0 mol-evol-owner@net.bio.net When replying, please edit your Subject line so it is more specific than "Re: Contents of Mol-evol digest..." Today's Topics: =C2=A0=C2=A0=C2=A01. phylogeny from mtDNA sequences (Stuart Barker (Prof)) ---------------------------------------------------------------------- Message: 1 Date: Mon, 31 Oct 2011 21:29:00 +1100 From: "Stuart Barker (Prof)" <sbarker@une.edu.au> Subject: [Molecular-evolution] phylogeny from mtDNA sequences To: mol-evol@magpie.bio.indiana.edu Message-ID: <a3njj0$m50lhv@outbound-mail04.westnet.com.au> Content-Type: text/plain; charset=3D"us-ascii"; format=3Dflowed I would appreciate any information on this question - Is anyone aware of cases where D-loop and Cytb sequences obtained=20 from the SAME animals give inconsistent phylogenies? Stuart Barker J.S.F. (Stuart) Barker HonDSc FTSE Emeritus Professor School of Environmental and Rural Science University of New England Armidale, NSW 2351 Australia Honorary Professor Faculty of Veterinary Science University of Sydney Sydney, NSW HOME: 5/19-23 Oaklands St Mittagong NSW 2575 Ph.=C2=A0 HOME ++ 61 2 4872 2490 email - sbarker@une.edu.au ------------------------------ _______________________________________________ Mol-evol mailing list Mol-evol@net.bio.net http://www.bio.net/biomail/listinfo/mol-evol End of Mol-evol Digest, Vol 65, Issue 1 *************************************** ---264029021-1313154562-1320144867=:69365 Content-Type: text/html; charset=utf-8 Content-Transfer-Encoding: quoted-printable <table cellspacing=3D"0" cellpadding=3D"0" border=3D"0" ><tr><td valign=3D"= top" style=3D"font: inherit;"><DIV>Hi, Pro. Barker </DIV> <DIV> I also met this issue in mine research. The differe= nt nucleotide substitution rate between D-loop and Cytb gene = ;may result in the inconsistent topology. </DIV> <DIV> </DIV> <DIV> </DIV> <DIV>--- <B>11=E5=B9=B411=E6=9C=881=E6=97=A5=EF=BC=8C=E5=91=A8=E4=BA=8C, mo= l-evol-request@oat.bio.indiana.edu <I><mol-evol-request@oat.bio.indiana.= edu></I></B> =E5=86=99=E9=81=93=EF=BC=9A<BR></DIV> <BLOCKQUOTE style=3D"PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: rgb(= 16,16,255) 2px solid"><BR>=E5=8F=91=E4=BB=B6=E4=BA=BA: mol-evol-request@oat= .bio.indiana.edu <mol-evol-request@oat.bio.indiana.edu><BR>=E4=B8=BB= =E9=A2=98: Mol-evol Digest, Vol 65, Issue 1<BR>=E6=94=B6=E4=BB=B6=E4=BA=BA:= mol-evol@magpie.bio.indiana.edu<BR>=E6=97=A5=E6=9C=9F: 2011=E5=B9=B411=E6= =9C=881=E6=97=A5,=E5=91=A8=E4=BA=8C,=E4=B8=8A=E5=8D=881:03<BR><BR> <DIV class=3DplainMail>Send Mol-evol mailing list submissions to<BR> &= nbsp; <A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to=3Dmol-e= vol@net.bio.net" ymailto=3D"mailto:mol-evol@net.bio.net">mol-evol@net.bio.n= et</A><BR><BR>To subscribe or unsubscribe via the World Wide Web, visit<BR>= <A href=3D"http://www.bio.net/biomail/listinfo/mol-evol"= target=3D_blank>http://www.bio.net/biomail/listinfo/mol-evol</A><BR>or, vi= a email, send a message with subject or body 'help' to<BR>  = ; <A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to=3Dmol-evol-reques= t@net.bio.net" ymailto=3D"mailto:mol-evol-request@net.bio.net">mol-evol-req= uest@net.bio.net</A><BR><BR>You can reach the person managing the list at<B= R> <A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?t= o=3Dmol-evol-owner@net.bio.net" ymailto=3D"mailto:mol-evol-owner@net.bio.ne= t">mol-evol-owner@net.bio.net</A><BR><BR>When replying, please edit your Su= bject line so it is more specific<BR>than "Re: Contents of Mol-evol digest..."<BR><BR><BR>T= oday's Topics:<BR><BR> 1. phylogeny from mtDNA sequences (= Stuart Barker (Prof))<BR><BR><BR>------------------------------------------= ----------------------------<BR><BR>Message: 1<BR>Date: Mon, 31 Oct 2011 21= :29:00 +1100<BR>From: "Stuart Barker (Prof)" <<A href=3D"http://cn.mc921= .mail.yahoo.com/mc/compose?to=3Dsbarker@une.edu.au" ymailto=3D"mailto:sbark= er@une.edu.au">sbarker@une.edu.au</A>><BR>Subject: [Molecular-evolution]= phylogeny from mtDNA sequences<BR>To: <A href=3D"http://cn.mc921.mail.yaho= o.com/mc/compose?to=3Dmol-evol@magpie.bio.indiana.edu" ymailto=3D"mailto:mo= l-evol@magpie.bio.indiana.edu">mol-evol@magpie.bio.indiana.edu</A><BR>Messa= ge-ID: <a3njj0$<A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to= =3Dm50lhv@outbound-mail04.westnet.com.au" ymailto=3D"mailto:m50lhv@outbound= -mail04.westnet.com.au">m50lhv@outbound-mail04.westnet.com.au</A>><BR>Co= ntent-Type: text/plain; charset=3D"us-ascii"; format=3Dflowed<BR><BR><BR>I would appre= ciate any information on this question -<BR><BR>Is anyone aware of cases wh= ere D-loop and Cytb sequences obtained <BR>from the SAME animals give incon= sistent phylogenies?<BR><BR>Stuart Barker<BR><BR>J.S.F. (Stuart) Barker Hon= DSc FTSE<BR>Emeritus Professor<BR>School of Environmental and Rural Science= <BR>University of New England<BR>Armidale, NSW 2351<BR>Australia<BR><BR>Hon= orary Professor<BR>Faculty of Veterinary Science<BR>University of Sydney<BR= >Sydney, NSW<BR><BR>HOME: 5/19-23 Oaklands St<BR>Mittagong<BR>NSW 2575<BR><= BR>Ph. HOME ++ 61 2 4872 2490<BR>email - <A href=3D"http://cn.mc921.m= ail.yahoo.com/mc/compose?to=3Dsbarker@une.edu.au" ymailto=3D"mailto:sbarker= @une.edu.au">sbarker@une.edu.au</A><BR><BR><BR><BR><BR>--------------------= ----------<BR><BR>_______________________________________________<BR>Mol-ev= ol mailing list<BR><A href=3D"http://cn.mc921.mail.yahoo.com/mc/compose?to=3DMol-evol@net.bio.ne= t" ymailto=3D"mailto:Mol-evol@net.bio.net">Mol-evol@net.bio.net</A><BR><A h= ref=3D"http://www.bio.net/biomail/listinfo/mol-evol" target=3D_blank>http:/= /www.bio.net/biomail/listinfo/mol-evol</A><BR><BR>End of Mol-evol Digest, V= ol 65, Issue 1<BR>***************************************<BR></DIV></BLOCKQ= UOTE></td></tr></table> ---264029021-1313154562-1320144867=:69365--
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