tag does not fit model error 4.9t

Article View: bionet.software.acedb

Article #24

Back to bionet.software.acedb Previous Next

#24

From: Mark Wilkinson
Date: Wed, 02 Feb 2005 09:08

41 lines
3340 bytes

Hi all!

Yes, I'm still kicking around with AceDB :-)

I'm experiencing a peculiarity that has me a bit befuddled.  I did the 
following:

1)  I have a models.wrm and a bunch of .ace files generated from a dump 
of  the associated database.
2)  I start up ACE  (4.9t) and initiatlize a new database with this 
models.wrm file.
3)  I start to read in the ACE files (b.t.w. why don't they all read in 
one after another like they used to?)
4)  I get an error in my Protein class saying that tag DNA_homol does 
not fit model.
5)  I look at the offending line in the .ace file and it is simply

Protein : xxxx
DNA_homol  yyyy

6)  I look at what is loaded into the database, and it has in fact been 
written into the DB!
7)  I open the "offending" Protein record, and make a dump of *just* 
that record.
8)  I look at the two .ace files side by side and they are 100% identical.

How can it be that Ace can read in a record, claim that there is an 
error, read it in regardless, and then dump out exactly the same 
"erroneous" record?  you'll have to trust me that the error message is 
incorrect,and that DNA_homol is, in fact, a valid tag in the model :-)

Any advice is welcome!!

Cheers all!

Mark




---

Technical Details

Message-ID: <41FF8D48.2060308@illuminae.com>

Path:

arc1-ca.pugleaf.net!g2news1.google.com!news4.google.com!newsfeed2.dallas1.level3.net!news.level3.com!bloom-beacon.mit.edu!rfcgr.mrc.ac.uk!hgmp.mrc.ac.uk!net.bio.net

Show Full Headers

Complete Article Headers

X-Google-Thread: f6d40,4087404380c3f8f8,start
X-Google-Attributes: gidf6d40,public
X-Google-Language: ENGLISH,ASCII-7-bit
Path: arc1-ca.pugleaf.net!g2news1.google.com!news4.google.com!newsfeed2.dallas1.level3.net!news.level3.com!bloom-beacon.mit.edu!rfcgr.mrc.ac.uk!hgmp.mrc.ac.uk!net.bio.net
From: markw@illuminae.com (Mark Wilkinson)
Newsgroups: bionet.software.acedb
Subject: tag does not fit model error 4.9t
Date: 2 Feb 2005 09:08:59 -0000
Organization: BIOSCI/MRC Rosalind Franklin Centre for Genomics Research
Lines: 42
Sender: mod-ace@rfcgr.mrc.ac.uk
Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net>
Message-ID: <41FF8D48.2060308@illuminae.com>
NNTP-Posting-Host: mercury.hgmp.mrc.ac.uk
Mime-Version: 1.0
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Content-Transfer-Encoding: 7bit
X-Trace: helium.hgmp.mrc.ac.uk 1107335339 29752 193.62.192.80 (2 Feb 2005 09:08:59 GMT)
X-Complaints-To: news@net.bio.net
NNTP-Posting-Date: Wed, 2 Feb 2005 09:08:59 +0000 (UTC)
X-Original-To: bionet-software-acedb@net.bio.net
X-Original-To: acedb@net.bio.net
X-Received: from localhost (localhost [127.0.0.1])
 by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id BBFF37D128
 for <acedb@net.bio.net>; Tue,  1 Feb 2005 16:30:54 +0000 (GMT)
X-Received: from mail04.your-site.com (mail04.your-site.com [38.117.195.113])
 by mercury.hgmp.mrc.ac.uk (Postfix) with ESMTP id 84A2C7D124
 for <acedb@net.bio.net>; Tue,  1 Feb 2005 16:30:51 +0000 (GMT)
X-Received: from [192.168.111.99] (unknown [137.82.67.190])
 by mail04.your-site.com (Postfix) with ESMTP id 8EE4A5E610
 for <acedb@net.bio.net>; Tue,  1 Feb 2005 11:08:45 -0500 (EST)
X-User-Agent: Mozilla/5.0 (Windows; U; Windows NT 5.1; en-US; rv:1.7.2) Gecko/20040804 Netscape/7.2 (ax)
X-Accept-Language: en-us, en
X-To: acedb@net.bio.net
X-Auth: PGPMoose V1.1 PGP bionet.software.acedb
 iQCVAwUAQgCYqqCIqsWvyF5FAQHx0wP/bD8RiclSgMqMbTOJirMBXx7hJcHZ3Uo9
 4nCvYT8Mvf3p4mmc5hBh2Y5G0JQiHa2B6Bhd8jb/oXF+BhuBeRK5T/saPV+ECQ7E
 UZOx4flRxiYY9MJNbTG0ITRRZuegJfL1FMLFZcqFufQF6eaeF36g7q//zia8/5ys
 zj3yccmIW7M=
 =lyA2