🚀 go-pugleaf

RetroBBS NetNews Server

Inspired by RockSolid Light RIP Retro Guy

Article View: bionet.software.acedb
Article #50

Re: [Acedb-soft] What AceDB "Error status = 139" means?

#50
From: Jing Yu
Date: Tue, 14 Feb 2006 16:21
95 lines
4296 bytes
> alright, how about stack size limits etc...?
> if you have very large objects I think this could be a problem

That sounds in the right track!  I do have very large objects and that's
where the problem starts to appear ...  I checked the ulimit on my server
(see bellow) but not sure what that means?  what is the current size that
I am having? - Could you give me a hint?  By the way, I run tace under
bash, shall I try other shell?

Thank you.

Jing

=====================
baumwolle:/usr/bin$ more ulimit 
#!/bin/ksh -p
#
#ident  "@(#)alias.sh   1.2     00/02/15 SMI"
#
# Copyright (c) 1995 by Sun Microsystems, Inc.
#
cmd=`basename $0`
$cmd "$@"
=====================



On Tue, 14 Feb 2006, Nicolas Thierry-Mieg wrote:

> alright, how about stack size limits etc...?
> if you have very large objects I think this could be a problem
> 
> (on bash, the relevant command is ulimit; on csh it's limit)
> 
> 
> 
> Jing Yu wrote:
> >> have you tried
> >>loading the data with tace instead of xace?
> > 
> > 
> > Yes.  The error message was given from tace.  :(
> > 
> > Jing
> > 
> > On Tue, 14 Feb 2006, Nicolas Thierry-Mieg wrote:
> > 
> > 
> >>hello
> >>
> >>this is a long shot, but just in case it's gtk-related: have you tried 
> >>loading the data with tace instead of xace?
> >>
> >>good luck
> >>nicolas
> >>
> >>Jing Yu wrote:
> >>
> >>>Hello,
> >>>
> >>>I got error message "Error status = 139" while loading data into
> >>>acedb.  Does anyone know what that means?  
> >>>
> >>>- The error message never appears when I load each data independently into
> >>>an empty database, but will appear when load them together or added
> >>>more data into a database that with large part of data existing.  
> >>>
> >>>- I've tried ace_4.9f, ace_4.9p, etc.; 
> >>>- The systems so far I've tried are:
> >>>   1. SunOS baumwolle 5.10 Generic sun4u sparc SUNW,Ultra-4
> >>>   2. SunOS algodon 5.8 Generic_108528-21 sun4u sparc SUNW,Ultra-60
> >>>   3. Linux ceres 2.2.16-22smp
> >>>   
> >>>And they all gave me the same error message.  And my dataset is not very
> >>>large yet, much smaller than that of graingenes (8 block*.wrm files of
> >>>mine compare to 69 block*.wrm files of graingenes, with the same size of
> >>>each block*.wrm in /database).
> >>>
> >>>Can anyone help me on this?  Thank you very much.
> >>>
> >>>
> >>>Jing
> >>>
> >>>
> 
> -- 
> ------------------------------------------------------------
> Problems with my digital signature? visit:
> http://igc.services.cnrs.fr/Doc/General/trust.html
> --------------------
> Nicolas Thierry-Mieg
> Laboratoire LSR-IMAG, BP 53, 38041 Grenoble Cedex 9, France
> tel : (33/0)4-76-63-55-79, fax : (33/0)4-76-63-55-50
> ------------------------------------------------------------
> 
Technical Details
Message-ID: <mailman.1102.1139934715.29584.acedb@net.bio.net>
Path: arc1-ca.pugleaf.net!g2news1.google.com!news3.google.com!newshub.sdsu.edu!logbridge.uoregon.edu!news.indiana.edu!not-for-mail

Show Full Headers
Complete Article Headers
X-Google-Thread: f6d40,c30c860cfecc912f
X-Google-Attributes: gidf6d40,public
X-Google-Language: ENGLISH,ASCII-7-bit
Path: arc1-ca.pugleaf.net!g2news1.google.com!news3.google.com!newshub.sdsu.edu!logbridge.uoregon.edu!news.indiana.edu!not-for-mail
From: Jing Yu <jingyu@algodon.tamu.edu>
Newsgroups: bionet.software.acedb
Subject: Re: [Acedb-soft] What AceDB "Error status = 139" means?
Date: Tue, 14 Feb 2006 10:21:49 -0600 (CST)
Organization: BIOSCI/IUBio, Biology Dept., Indiana University
Lines: 96
Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net>
Message-ID: <mailman.1102.1139934715.29584.acedb@net.bio.net>
NNTP-Posting-Host: oat.bio.indiana.edu
Mime-Version: 1.0
Content-Type: TEXT/PLAIN; charset=US-ASCII
X-Trace: rainier.uits.indiana.edu 1139934741 24096 129.79.225.149 (14 Feb 2006 16:32:21 GMT)
X-Complaints-To: news-admin@indiana.edu
NNTP-Posting-Date: Tue, 14 Feb 2006 16:32:21 +0000 (UTC)
Cc: acedb@magpie.bio.indiana.edu
To: Nicolas Thierry-Mieg <Nicolas.Thierry-Mieg@imag.fr>
In-Reply-To: <43F1F81C.1040002@imag.fr>
X-Mailman-Approved-At: Tue, 14 Feb 2006 11:31:54 -0500
X-BeenThere: acedb@net.bio.net
X-Mailman-Version: 2.1.4
Precedence: list
X-Auth: PGPMoose V1.1 PGP bionet.software.acedb
 iQCVAwUBQ/IF/KCIqsWvyF5FAQHjpwP+JH1H5TgPkZsg7KketEaBBItTB0HeFBh1
 3ND57n+2BZ009jVvzTijYZilg67DGF4jY9caSgpPuozvG03W8R/2/jKLELUqbl1q
 2pLyHuIIni1EeFsKiRTB8DkCKIDKoI8sPLFzwR9WrDoybwhT0UsZGlC/DsNrqsg6
 wWcfe0tAODQ= =Oim9