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Article #50Re: [Acedb-soft] What AceDB "Error status = 139" means?
From: Jing Yu
Date: Tue, 14 Feb 2006 16:21
Date: Tue, 14 Feb 2006 16:21
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4296 bytes
> alright, how about stack size limits etc...? > if you have very large objects I think this could be a problem That sounds in the right track! I do have very large objects and that's where the problem starts to appear ... I checked the ulimit on my server (see bellow) but not sure what that means? what is the current size that I am having? - Could you give me a hint? By the way, I run tace under bash, shall I try other shell? Thank you. Jing ===================== baumwolle:/usr/bin$ more ulimit #!/bin/ksh -p # #ident "@(#)alias.sh 1.2 00/02/15 SMI" # # Copyright (c) 1995 by Sun Microsystems, Inc. # cmd=`basename $0` $cmd "$@" ===================== On Tue, 14 Feb 2006, Nicolas Thierry-Mieg wrote: > alright, how about stack size limits etc...? > if you have very large objects I think this could be a problem > > (on bash, the relevant command is ulimit; on csh it's limit) > > > > Jing Yu wrote: > >> have you tried > >>loading the data with tace instead of xace? > > > > > > Yes. The error message was given from tace. :( > > > > Jing > > > > On Tue, 14 Feb 2006, Nicolas Thierry-Mieg wrote: > > > > > >>hello > >> > >>this is a long shot, but just in case it's gtk-related: have you tried > >>loading the data with tace instead of xace? > >> > >>good luck > >>nicolas > >> > >>Jing Yu wrote: > >> > >>>Hello, > >>> > >>>I got error message "Error status = 139" while loading data into > >>>acedb. Does anyone know what that means? > >>> > >>>- The error message never appears when I load each data independently into > >>>an empty database, but will appear when load them together or added > >>>more data into a database that with large part of data existing. > >>> > >>>- I've tried ace_4.9f, ace_4.9p, etc.; > >>>- The systems so far I've tried are: > >>> 1. SunOS baumwolle 5.10 Generic sun4u sparc SUNW,Ultra-4 > >>> 2. SunOS algodon 5.8 Generic_108528-21 sun4u sparc SUNW,Ultra-60 > >>> 3. Linux ceres 2.2.16-22smp > >>> > >>>And they all gave me the same error message. And my dataset is not very > >>>large yet, much smaller than that of graingenes (8 block*.wrm files of > >>>mine compare to 69 block*.wrm files of graingenes, with the same size of > >>>each block*.wrm in /database). > >>> > >>>Can anyone help me on this? Thank you very much. > >>> > >>> > >>>Jing > >>> > >>> > > -- > ------------------------------------------------------------ > Problems with my digital signature? visit: > http://igc.services.cnrs.fr/Doc/General/trust.html > -------------------- > Nicolas Thierry-Mieg > Laboratoire LSR-IMAG, BP 53, 38041 Grenoble Cedex 9, France > tel : (33/0)4-76-63-55-79, fax : (33/0)4-76-63-55-50 > ------------------------------------------------------------ >
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X-Google-Thread: f6d40,c30c860cfecc912f X-Google-Attributes: gidf6d40,public X-Google-Language: ENGLISH,ASCII-7-bit Path: arc1-ca.pugleaf.net!g2news1.google.com!news3.google.com!newshub.sdsu.edu!logbridge.uoregon.edu!news.indiana.edu!not-for-mail From: Jing Yu <jingyu@algodon.tamu.edu> Newsgroups: bionet.software.acedb Subject: Re: [Acedb-soft] What AceDB "Error status = 139" means? Date: Tue, 14 Feb 2006 10:21:49 -0600 (CST) Organization: BIOSCI/IUBio, Biology Dept., Indiana University Lines: 96 Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <mailman.1102.1139934715.29584.acedb@net.bio.net> NNTP-Posting-Host: oat.bio.indiana.edu Mime-Version: 1.0 Content-Type: TEXT/PLAIN; charset=US-ASCII X-Trace: rainier.uits.indiana.edu 1139934741 24096 129.79.225.149 (14 Feb 2006 16:32:21 GMT) X-Complaints-To: news-admin@indiana.edu NNTP-Posting-Date: Tue, 14 Feb 2006 16:32:21 +0000 (UTC) Cc: acedb@magpie.bio.indiana.edu To: Nicolas Thierry-Mieg <Nicolas.Thierry-Mieg@imag.fr> In-Reply-To: <43F1F81C.1040002@imag.fr> X-Mailman-Approved-At: Tue, 14 Feb 2006 11:31:54 -0500 X-BeenThere: acedb@net.bio.net X-Mailman-Version: 2.1.4 Precedence: list X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUBQ/IF/KCIqsWvyF5FAQHjpwP+JH1H5TgPkZsg7KketEaBBItTB0HeFBh1 3ND57n+2BZ009jVvzTijYZilg67DGF4jY9caSgpPuozvG03W8R/2/jKLELUqbl1q 2pLyHuIIni1EeFsKiRTB8DkCKIDKoI8sPLFzwR9WrDoybwhT0UsZGlC/DsNrqsg6 wWcfe0tAODQ= =Oim9