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Article #51ulimit ["Error status = 139"]
From: Dave Matthews
Date: Tue, 14 Feb 2006 17:04
Date: Tue, 14 Feb 2006 17:04
32 lines
2290 bytes
2290 bytes
Hi Jing, > I checked the ulimit on my server > (see bellow) but not sure what that means? what is the current size that > I am having? - Could you give me a hint? In bash, say "ulimit -a". On greengenes this gives me: $ ulimit -a time(seconds) unlimited file(blocks) unlimited data(kbytes) unlimited stack(kbytes) 8192 coredump(blocks) 0 nofiles(descriptors) 64 memory(kbytes) unlimited This reminds me, a few months ago I had to reset the limit on descriptors (the number of files open at the same time) in order to load GrainGenes. User acedb's .cshrc has this: # dem 8nov05: The default 64 descriptors isn't enough for loading ACEDB now. unlimit descriptors This is because GG's database/ directory has so many files, which isn't your problem. If your problem is running out of stack space there might be a message in the system log, /var/adm/messages or wherever it is in baumwolle. - Dave
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X-Google-Thread: f6d40,af45e96edd4c1e1d,start X-Google-Attributes: gidf6d40,public X-Google-Language: ENGLISH,ASCII-7-bit Path: arc1-ca.pugleaf.net!g2news1.google.com!news1.google.com!news4.google.com!news.glorb.com!logbridge.uoregon.edu!news.indiana.edu!not-for-mail From: Dave Matthews <matthews@greengenes.cit.cornell.edu> Newsgroups: bionet.software.acedb Subject: ulimit ["Error status = 139"] Date: Tue, 14 Feb 2006 12:04:57 -0500 (EST) Organization: BIOSCI/IUBio, Biology Dept., Indiana University Lines: 33 Approved: BIOSCI Approval Key <biosci-approval-key@net.bio.net> Message-ID: <mailman.1103.1139936815.29584.acedb@net.bio.net> NNTP-Posting-Host: oat.bio.indiana.edu X-Trace: rainier.uits.indiana.edu 1139936842 24726 129.79.225.149 (14 Feb 2006 17:07:22 GMT) X-Complaints-To: news-admin@indiana.edu NNTP-Posting-Date: Tue, 14 Feb 2006 17:07:22 +0000 (UTC) Cc: ACEDB newsgroup <acedb@magpie.bio.indiana.edu> To: Jing Yu <jingyu@tamu.edu> X-Mailman-Approved-At: Tue, 14 Feb 2006 12:06:53 -0500 X-BeenThere: acedb@net.bio.net X-Mailman-Version: 2.1.4 Precedence: list X-Auth: PGPMoose V1.1 PGP bionet.software.acedb iQCVAwUBQ/IOMKCIqsWvyF5FAQEUDwQAlIb/8ySdkLK9NgEK0XW4bKC6An8yrZs8 EA5c5Nudz1Voq58mt0K73OZ89LAcCTrVBTtuTSIkVGO7XzxWVTGIIIHLsMyIQavK CgZ/mRuOkNfndPkpTlhiRW5BbZquRMiehCzFo4Dwt0XHnMzqwF9r+fu8a8FnO6E1 34jbbs+TMDk= =zIPW